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Detailed information on CNT30366947


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6L399|PSAB_SACHY, E-value = 2e-74

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30374334Sorghum bicolorArabidopsis thaliana20.14.1987.11287forward
CNT30501326Sorghum bicolorCoffea canephora22.2389.27317forward
CNT30220832Sorghum bicolorHordeum vulgare28.5747.3993.87408forward
CNT30438754Sorghum bicolorAegilops tauschii14.6499.5299.04209reverse complement
CNT30713027Sorghum bicolorMalus domestica golden21.998.988.85314forward
CNT30152144Sorghum bicolorPrunus persica13.4590.1488.02192forward
CNT30102192Sorghum bicolorOryza rufipogon22.2713.8997.48318forward
CNT30496729Sorghum bicolorDigitaria exilis25.4235.6997.52363forward

Expression of CNT30366947

Peptides detected in this lncRNA

>peptide 1 (60 aa)
MGIALNDLASVVLSRRRLFRCGERKGKVKYFGLGFVEYYFVLNKPTTLLLVYHLCQSLGN*

>peptide 2 (34 aa)
MMMSNIGQPQTLCLWMESPKKGQNGSSRSLSGTK*

>peptide 3 (34 aa)
WNGPRKDYVREIILTANFPSSEQINVVFSPTNHW*

Sequence

>CNT30366947
TTGGAATGGTCCTAGGAAAGACTACGTACGAGAAATCATTCTCACAGCCAACTTTCCTTCTTCTGAGCAAATAAATGTAGTATTTAGTCCAACCAATCAT
TGGTGAATCTCAGGCGACGAAAGTCATGAAAATTGGTAAGTTGGTCAATGGAATCCAGTCGAAAGATCAAGAAAGCAAAGCATAAGAAGGAGAGAAGATA
TCCTACATTACATATGTGATTTTGTTGAGTCATTTTTTTCGTACTCTTTTCCGCAGGAGGATAAAAAATGGGAATTGCTTTGAATGACCTAGCGTCCGTC
GTCTTGTCCCGAAGAAGGCTTTTTCGGTGCGGAGAAAGGAAGGGGAAAGTAAAGTATTTCGGACTAGGTTTTGTAGAGTATTATTTTGTGCTGAATAAAC
CGACGACTTTGCTGTTAGTTTATCACCTTTGTCAAAGTCTCGGCAATTAAGTGGAGGGCTATGTTCTAAGGAAGCTAGAGCAAGGCCTAATTGAAAATGA
ATCGAATTATTGATTGTATCATAAAGGCCTTTATGCCCACGTCCTAATCGACCCCCCGGAGGAGTATGTGCTTCTAAAAGATCTTTGATACTGTGCCCAA
TTCCAAAGTTAGTTCGATACATATGACCGGCAATGAGAAAAATAAATGCAATAGGTAAATGATGATGAGCAATATCGGTCAGCCACAAACTTTGTGTTTG
TGGATGGAATCCCCCAAGAAGGGTCAGAATGGCAGTTCCCGCTCCTTGAGTGGTACCAAATAAATGATTACTCGAATCAGGATTTTGGGCATAAAGATTC
CACTGACCCGTCAGAAGGGGACCCAACCCCTGGGGATAGGGTAATACATCTAAGAAATTATTCCATCGAACGAGAACAAAAGGAGTAAGAAGAAACAGGC
TAAGATTCAATTGACCTATATAGCAACCAGTTCAACTAAAGGAAGTAGCTTACGGGCTTAAGGCTGCTAGGGACTCTGGGGCGAGAAGAAGCTTTTCCCG
CGTTCCTGTTGATGCAGAGATCAGACGAGAAGGCCCATCTCTTTACTAGAATCCGATGTGATAGAAGGAGCAGCTCTAGCTTAAGCCTAAGTTGATCCTT
ACTTACTGTTCAAGTCAATCGTATCAGTCTTATTGAAGAATTTGGAATGAAAAGAGGAGTAATGCTTCCTAGCACGGGACAGAGAATAGGACCACTTAGA
TCGAAATAGCATTCACTGAAATGTTCTAACATAGAGTAGAATCGAACATTGAAAAGATTAGTTGACAACAGTCAATCAAAAGATGGGGCGCCAAATTACT
AAACAATAGGGGTCTTTCTGTGCAAGTCAGCTGAACACCGTAATTGATGAGTGAGTAGGTGGGTTAGGTGCACCCCTCGCCCAGTGGGAAGTCATGAGGC
TAGCCCCCCTGAATGAAGAAGTAGTGGG