CANTATAdb - search

Detailed information on CNT3036672

BLAST search results

BLAST vs Swiss-Prot:
sp|P25209|NFYB_MAIZE, E-value = 1e-59

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30619222	Cucumis melo	Sesamum indicum	16.76	44.88	82.61	92	forward
CNT30717318	Cucumis melo	Malus domestica golden	14.21	36.45	88.46	78	forward

Expression of CNT3036672

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MILLIFAIGRNLSCSRTLDLGLCSPLSWLPPPGLAGASAIFTKT

Sequence

>CNT3036672
CTGAGGAATAGGGGTTGGATGAGCTTCTTTCTTAGCTGACCCATCACCACCTTTAGCAGACCCCTTAGTCCGAATGACTACCTCTCTGTATTTCGTCAAG
TAGGTTTTAAGTGGATCGATATAATCCTCAAATCCAAGAGTGGCCATGGCCCAAAGTAAATCATCACCATTAATCGTCTTCCGTTTCTCTCTTTGACATT
TATCACTTGCCCTAGAAAGTAGAAACAATTCAACCATCGAAAAAAAAAATCCCCCAAATTCAGAACATGGAGAAGGGAAAACTAATTAATCAAAACTGAT
CATAAAAATACTCGCGTACTCGCTAGTAATAAAACTGATAAACTCCGATACACATTCTTGTACGGTTTCTTTAGCATCCTTAGCAATCTTCCCATTAGCA
GGAAGAGCCTTCTTCATGATCCTACTAATATTCGCAATAGGAAGAAACCTATCCTGTTCGCGAACATTAGACCTCGGACTCTGCTCACCGCTCTCATGGC
TTCCTCCGCCGGGACTCGCCGGAGCATCAGCCATCTTCACCAAAACCCT