« Back to Sorghum bicolor search


Detailed information on CNT30366570


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30523536Sorghum bicolorSetaria italica90.8598.4189.03556forward
CNT30640872Sorghum bicolorNymphaea colorata58.0146.979.15355forward
CNT30536042Sorghum bicolorEucalyptus grandis44.7749.8281.75274forward
CNT30549269Sorghum bicolorIpomoea triloba40.0345.5480.41245forward
CNT30700558Sorghum bicolorQuercus lobata35.7881.1182.19219forward
CNT30376889Sorghum bicolorArabidopsis thaliana44.7778.2982.48274forward
CNT30500730Sorghum bicolorCoffea canephora37.5826.6281.74230forward
CNT30616511Sorghum bicolorSesamum indicum43.9541.1981.04269forward
CNT30628702Sorghum bicolorVigna unguiculata41.0136.6482.87251forward
CNT30490956Sorghum bicolorOlea europaea55.2380.4880.18338forward
CNT30506119Sorghum bicolorNicotiana attenuata35.1353.8882.79215forward
CNT30710467Sorghum bicolorGlycine max49.3541.7781.79302forward
CNT3042412Sorghum bicolorPrunus dulcis59.6449.2681.64365forward
CNT30193210Sorghum bicolorSecale cereale27.7879.4485.29170forward
CNT30591858Sorghum bicolorMusa acuminata57.1969.0380.86350forward
CNT30235097Sorghum bicolorBrassica oleracea52.2939.9580.94320forward
CNT30508722Sorghum bicolorSolanum lycopersicum36.1143.0882.81221forward
CNT30668234Sorghum bicolorTriticum dicoccoides26.3127.3887.58161forward
CNT30312432Sorghum bicolorCamelina sativa48.3776.0980.74296forward
CNT30263459Sorghum bicolorBrassica rapa52.2959.1580.94320forward
CNT3016764Sorghum bicolorZea mays90.8598.9391.37556forward
CNT30688491Sorghum bicolorTriticum urartu59.6485.2884.11365forward
CNT30341750Sorghum bicolorEragrostis tef85.6296.6885.69524forward
CNT30476914Sorghum bicolorArabidopsis halleri55.3960.5480.53339forward
CNT30354818Sorghum bicolorLactuca sativa48.3756.681.76296forward
CNT30154935Sorghum bicolorPrunus persica66.0195.0681.68404forward
CNT30574226Sorghum bicolorVitis vinifera51.9663.7380.5318forward
CNT30109704Sorghum bicolorOryza longistaminata40.5244.684.27248forward
CNT3035160Sorghum bicolorCucumis melo57.6870.0479.6353forward

Expression of CNT30366570

Peptides detected in this lncRNA

>peptide 1 (33 aa)
LEKSDYMESSGGCLESMHAKGCTWLMKDCSSEK*

Sequence

>CNT30366570
CTTGGAGAAGTCTGACTATATGGAGTCATCCGGGGGCTGCTTGGAGAGTATGCATGCGAAGGGCTGTACTTGGCTGATGAAGGATTGTAGCTCGGAGAAG
TAGGACTGTAGCTCGGAGAAGTAGGACTGTAGCTCGGTGATGTTGGGCTGTATCCTGGCGAAGTAGGGCTGTATGCAGGTGATGTTGGGCTGTACGAGGG
GGAGGTAGGGCTGTATGAGGGGGATGTTGGGCTGTATGATGGTGATGTAGGGCTATAAGATGGCGAAGTTGGACTGTAAGATGGTGATGTGGGGCTGTAA
CTTGGTGATGTAGGACTATAACTAGGAGATGTAGGGCTGTAGCTTGGTGATGTAGGACTGTAGCTAGGAGATGTTGGGCTGTAACTCGGAGATGTGGGTG
AGTATGATGGACTGGTAGGCGAGTAAGTCGGACTTGTTGGGGAGTAATTCGGGCTTGTGGGACTGTAGGTGGGAGAGCCAGGTGTATATGATGGTGAGGT
GGGACTATAGCTTGGCGATGCAGGGCTGTATGATGGAGAAAGAGGGCTATATCCTTTCTCTGGGGTGAAAACAGGAGAAGATGGACTGTATCCCCCTGAC
GATGGAGAGTAA