CANTATAdb - search

Detailed information on CNT30366505

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT3091192	Sorghum bicolor	Solanum tuberosum	33.07	30.16	81.82	209	forward
CNT30263848	Sorghum bicolor	Brassica rapa	35.44	52.96	81.7	224	forward
CNT30574179	Sorghum bicolor	Vitis vinifera	41.14	79.75	80	260	forward
CNT3027877	Sorghum bicolor	Theobroma cacao	45.89	73.42	81.38	290	forward

Expression of CNT30366505

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MDCIPLTMESNHLVKGMVRMPCAQHMVRTKHLY*

>peptide 2 (34 aa)
SLEKSDYMESSGGCLESMHAKGCTWLMKDCSSEK*

Sequence

>CNT30366505
GTAGCTTGGAGAAGTCTGACTATATGGAGTCATCCGGGGGCTGCTTGGAGAGTATGCATGCGAAGGGCTGTACTTGGCTGATGAAGGATTGTAGCTCGGA
GAAGTAGGACTGTAGCTCGGAGAAGTAGGACTGTAGCTCGGTGATGTTGGGCTGTATCCTGGCGAAGTAGGGCTGTATGCAGGTGATGTTGGGCTGTACG
AGGGGGAGGTAGGGCTGTATGAGGGGGATGTTGGGCTGTATGATGGTGATGTAGGGCTATAAGATGGCGAAGTTGGACTGTAAGATGGTGATGTGGGGCT
ATATGCGGGAGATGTAGGGCTGTATGCTGGAGATGTAGGGCTATAAACTGGTGAGGTGGGACTATAGCTTGGCGATGCAGGGCTGTATGATGGAGAAAGA
GGGCTATATCCTTTCTCTGGGGTGAAAACAGGAGAAGATGGACTGTATCCCCCTGACGATGGAGAGTAACCACCTGGTGAAGGGAATGGTGAGAATGCCA
TGTGCCCAACATATGGTGAGAACGAAGCATCTGTATTAATGGGGGAAGCCCTGATGTTTGGACTCAGCAGATAACTTGGGGACATCATTCCTTCATGGTA
AGGTGTCCCAGAGATGGGTGATCGTGCTGGTG