Detailed information on CNT30366370


BLAST search results

BLAST vs Swiss-Prot:
sp|Q94HW2|POLR1_ARATH, E-value = 1e-69

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30369689Sorghum bicolorOryza glumipatula23.2523.7778.36305forward
CNT30109053Sorghum bicolorOryza longistaminata23.8619.2779.23313forward
CNT30101709Sorghum bicolorOryza rufipogon23.2524.1178.36305forward

Expression of CNT30366370

Peptides detected in this lncRNA

>peptide 1 (70 aa)
MLVDLLQSNPPPHLLKLGLSQRLGEYVCKLISSRDVAGLDTSIFQAVSDEVVLDSYVLASVVEDWVLGQS*

>peptide 2 (65 aa)
MWLALILPSSRQSLMKWYLILMCLLLSWKTGFLARAKADLLSTFNSTTSTSLPSSSPSSLDNHSA*

>peptide 3 (98 aa)
MLHRGPLHEPAHVPDGKRQVRPGMHEVPEAADKPPVVRGVHLLSLALPAQAKLLFHGRLRRIAANHLAELEDPLGIVSLAESDAPGILTHLDAEIEAE*

>peptide 4 (70 aa)
PRGQLGPWPLGLNQNCDNRDTIEGGGSATYIAMWSATHSRICYSKSKDACSKLGCQGTATTNAEIKIHSN*

>peptide 5 (47 aa)
MYSASQLDKATTLCLIDCQLTRQSPKKNIVPLVLLLVSMSPARSLSQ*

>peptide 6 (65 aa)
MSNLSFICALKLLTSSSSAPVMMRSSTYTPTSRTERPLPRRYTAASCALWVKPIAFRVASRFAFQA

>peptide 7 (42 aa)
MRFTACRCSTVGRSMNRLTYPTANAKSGRVCTRYRRLPTSRR*

Sequence

>CNT30366370
GCCCAGAGGGCAGCTTGGCCCTTGGCCGCTTGGATTGAATCAAAATTGTGATAACAGGGATACAATAGAGGGAGGGGGGTCTGCCACTTATATAGCAATG
TGGTCAGCCACCCACTCCAGAATATGCTATAGCAAAAGTAAAGATGCCTGCTCCAAACTTGGATGCCAAGGCACTGCTACTACTAATGCAGAAATTAAGA
TACATAGCAATTAGGCTTAACTAACATTCTCCCCCTAAGCCTAATGCTGGTTGATCTGCTCCAGTCCAATCCTCCTCCTCATCTCCTGAAACTTGGCCTT
TCCCAGAGACTTGGTGAGTATGTCTGCAAGCTGATCAGTAGTAGGGATGTGGCTGGCCTTGATACTTCCATCTTCCAGGCAGTCTCTGATGAAGTGGTAC
TTGATTCTTATGTGCTTGCTTCTGTCGTGGAAGACTGGGTTCTTGGCCAGAGCTAAAGCAGACTTGCTGTCCACCTTCAACTCCACCACATCAACTTCTT
TGCCCAGCAGCTCCCCGAGCAGTCTGGACAACCATAGTGCTTGAGTTGCAGCAGAGGCAGTAGCAATGTATTCTGCCTCGCAGCTTGACAAGGCCACCAC
TCTCTGCTTGATTGACTGCCAGCTGACCAGACAATCGCCCAAGAAGAACATAGTCCCACTGGTGCTCTTGCTTGTATCGATGTCACCGGCGAGGTCGCTG
TCACAGTAGCCGATGAAGCGCGCTGTTCCAGGAGCCCTCTTGTAGTGAAGACCATACTCCAGAGTCCCAGCAACGTAGCGGAGGATGCGCTTCACCGCCT
GCAGATGCTCCACCGTGGGCCGCTCCATGAACCGGCTCACGTACCCGACGGCAAACGCCAAGTCCGGCCGGGTATGCACGAGGTACCGGAGGCTGCCGAC
AAGCCGCCGGTAGTGCGTGGAGTCCACCTCCTCAGCCTTGCTCTCCCTGCTCAGGCGAAGCTTCTCTTCCATGGGCGTCTGCGCCGGATTGCAGCCAACC
ATCTCGCCGAGCTCGAGGATCCGCTTGGCATAGTGAGTCTGGCGGAGAGTGATGCCCCTGGCATCCTGACGCACCTCGACGCCGAGATAGAAGCAGAGTA
AGCCAAGGTCGCTCATGTCGAACCTTTCCTTCATCTGCGCCTTGAAGCTCTTGACCTCCTCCTCCTCAGCGCCGGTGATGATGAGGTCGTCGACGTACAC
CCCGACGAGCAGGACAGAGCGTCCGCTGCCCCGCCGATACACAGCCGCCTCGTGCGCGCTCTGGGTGAAGCCCATCGCCTTCAGGGTGGCGTCCCGCTTC
GCGTTCCAGGCG