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Detailed information on CNT30366171


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30524665Sorghum bicolorSetaria italica54.9596.1587.15599reverse complement
CNT30221733Sorghum bicolorHordeum vulgare14.2249.0592.26155forward
CNT30436372Sorghum bicolorAegilops tauschii16.8827.3489.67184reverse complement
CNT3010052Sorghum bicolorZea mays21.9396.3787.03239reverse complement
CNT30688963Sorghum bicolorTriticum urartu16.8845.2190.22184reverse complement
CNT30150383Sorghum bicolorBrachypodium distachyon10.7334.8288.03117reverse complement
CNT30116714Sorghum bicolorOryza nivara22.2931.5688.48243reverse complement

Expression of CNT30366171

Peptides detected in this lncRNA

>peptide 1 (45 aa)
LLHIETCYTIVGVRIIFWDGCSHCPQAEPDCPVMNLPLDCPNLFF*

>peptide 2 (31 aa)
MDKGFQKSNFLFNTIFFFRILCSSTHAIESE*

>peptide 3 (29 aa)
MTIAVGRRLIISQWTTDFPWMHILIPLLE*

Sequence

>CNT30366171
GTTTGTTGCACATAGAGACATGTTATACTATTGTAGGAGTTCGCATAATTTTCTGGGATGGTTGTAGCCATTGCCCACAAGCTGAACCTGACTGTCCTGT
GATGAACTTACCTCTAGATTGCCCTAACCTTTTTTTTTAAACCGTGAGTATAGCAAAGAGGTCAAAGAGCTGCACAAAAACTATTATAGAGATTGCCCCA
ACCTTCCCCCTTGAATGATGCCTCTATCCGCTATTCTGATATATAAATTCGATGTGGATGAAATTGGTGTATAAGCGAAATTTTTTATTTCCTTAGACTT
AGATCGTGCAAGGCAAGAATTTTTCACTATTTACGATTTCATATTCTTGTTACTAGACGTTCGCAACTCTTTTCTGTTACACATAATGGATAAAGGGTTT
CAAAAGTCAAATTTTCTTTTCAATACCATTTTTTTTTTCAGAATTCTATGTTCTTCCACCCATGCAATAGAGAGCGAATGAGAAAAGAGGGCTTTTCCCT
TTAAAATAGGTTTCGAAATAGAAATTATGGAATAATGCTGAATTCAAATGTTTATTTCTTTATTTCATTTTTATAGTATAAGAAAAATGAATTAAATGAA
ATTCATGGATTTATTACGGCCTTGGTTGTGACCCCATAGATAAAAATGCAAAATTTCTATCTTCGAGGCGACTGAAAAAGGGCATTGAACGAGAAAGAAA
TCATCCACATATAATCAAACTGTCGTATGCCCTGGAAGTAATATGAGGTGCTCGAAAATGGTTGAAGTAATTGAATAGGAGGATCACTATGACTATAGCC
GTCGGTAGACGCCTGATCATATCACAATGGACTACAGATTTTCCATGGATGCATATTCTGATCCCACTGCTTGAGTAGTATTTTGTTATATTCCCACAGA
GAATCTGAACTTTTTTTTTTCTCGAAAACGCAGGAGAGCTGCGCTTCATTATATTAAGAAGAAAAAAGAGGGCTAGAGAGCCCTACAACACACACAAAAC
ACAAACCCCACACTTAGAGATTACACTCGCGCCCGCAAAACAGACAGGGAAGCGACCAAAAGGACTAGCACTAAGCTAACCACCAAGGAG