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Detailed information on CNT30365858


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7XSQ9|PIP12_ORYSJ, E-value = 2e-56

BLAST vs NONCODE:
NONGMAT001758, E-value = 3e-10

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30519732Sorghum bicolorSetaria italica52.4966.295.26190forward
CNT30531266Sorghum bicolorEucalyptus grandis21.2718.287.0177forward
CNT30546615Sorghum bicolorIpomoea triloba24.8633.4687.7890forward
CNT3044723Sorghum bicolorPrunus dulcis22.939.0984.3483forward
CNT30564991Sorghum bicolorActinidia chinensis79.0170.7981.82286forward
CNT30590202Sorghum bicolorMusa acuminata42.8217.1585.16155forward
CNT30541063Sorghum bicolorBrassica napus32.8714.9982.35119forward
CNT3060017Sorghum bicolorArabidopsis lyrata22.9310.3284.3483reverse complement
CNT30131632Sorghum bicolorLolium perenne46.6977.1791.72169forward
CNT3013584Sorghum bicolorZea mays25.697.4890.3293forward
CNT30706529Sorghum bicolorPrunus avium33.98886.18123forward
CNT30325169Sorghum bicolorAsparagus officinalis60.2282.2685.78218forward
CNT3038888Sorghum bicolorCucumis melo37.8513.2481.75137forward
CNT30101140Sorghum bicolorOryza rufipogon17.6824.4395.3164forward
CNT3065055Sorghum bicolorSelaginella moellendorffii22.9322.4986.7583forward

Expression of CNT30365858

Peptides detected in this lncRNA

>peptide 1 (51 aa)
RHMGVPGVPLGVGGGEDGVDEDEGADDLSAEGEDHAAKGPGDALDADGGAL*

>peptide 2 (31 aa)
MPPKDQAMPWMPTVAHFEVDLETPMTVRMEM*

>peptide 3 (58 aa)
AHGSPWRSSWRRWRRRRCRRGRRCRRSQRRGRRSCRQRTRRCPGCRRWRTLRWTWRRP*

Sequence

>CNT30365858
CGGCACATGGGAGTCCCTGGCGTTCCTCTTGGCGTCGGTGGCGGAGAAGACGGTGTAGACGAGGACGAAGGTGCCGACGATCTCAGCGCCGAGGGCGAAG
ATCATGCCGCCAAAGGACCAGGCGATGCCCTGGATGCCGACGGTGGCGCACTTTGAGGTGGACTTGGAGACGCCCATGACGGTGAGGATGGAGATGTAGA
GGAAGAGGAAGGTGGCGACGAACTCGGCGATGCCCGCGCGGTAGAAGGACCACGACTTGAGCTCACCGGGCTCGAAGAGCGGCGCCGGCGGGGGCTCCTT
GTAGTCCTTGTCGTCGGTGCCCTGCGCCGCCGTGCCGATGGGCTGGCGCTCCGAGTACTTGT