Detailed information on CNT30365573


BLAST search results

BLAST vs Swiss-Prot:
sp|P32112|SAHH_WHEAT, E-value = 2e-41

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671211Sorghum bicolorSetaria viridis27.245.594.7996forward
CNT30639595Sorghum bicolorNymphaea colorata38.5328.8187.5136forward
CNT30628366Sorghum bicolorVigna unguiculata66.2916.3880.77234forward
CNT30587418Sorghum bicolorMusa acuminata32.2915.0288.6114forward
CNT3084173Sorghum bicolorVigna radiata57.7929.3181.37204forward
CNT30435910Sorghum bicolorAegilops tauschii26.6311.7993.6294forward
CNT30611972Sorghum bicolorArabis alpina25.2137.3986.5289forward
CNT3041102Sorghum bicolorChlamydomonas reinhardtii29.7527.0682.86105forward
CNT30354795Sorghum bicolorLactuca sativa42.4917.8180.67150forward
CNT30329937Sorghum bicolorDioscorea rotundata22.957.8287.6581forward
CNT30103950Sorghum bicolorOryza rufipogon51.2752.9292.82181forward
CNT3065844Sorghum bicolorSelaginella moellendorffii39.6640.1185140forward

Expression of CNT30365573

Peptides detected in this lncRNA

>peptide 1 (79 aa)
LALGDGVVDVNSREEEGAGLLHLVEPLDSGGGLLRDADKPLLHLAVLLRVSLKPVADDGEHDLELSVVCGLRVGDLAGP*

>peptide 2 (60 aa)
MMVSTILNSALSVDSGSGILPVLDLVLPPRRGLLHRERHGSGGRRSRELDLGRGDGMGGGE

Sequence

>CNT30365573
CTTGCTCTTGGTGACGGAGTCGTTGACGTTAATAGCAGGGAAGAGGAGGGCGCCGGTCTCCTGCATCTGGTAGAGCCTCTTGACTCCGGTGGTGGTCTCC
TCAGAGACGCCGACAAGCCTCTCCTTCATCTTGCGGTACTTCTTAGGGTCAGCCTTAAGCCCGTCGCGGATGATGGTGAGCACGATCTTGAACTCAGCGT
TGTCTGTGGACTCCGGGTCGGGGATCTTGCCGGTCCTTGACCTTGTGCTCCCGCCCAGACGAGGTCTTCTCCACAGAGAGCGCCATGGCAGCGGCGGACG
GAGAAGTCGAGAATTGGATCTGGGCAGGGGGGACGGAATGGGAGGAGGGGAGG