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Detailed information on CNT30365475


BLAST search results

BLAST vs Swiss-Prot:
sp|P46257|ALF2_PEA, E-value = 3e-17

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677073Sorghum bicolorSetaria viridis23.212.296.74184forward
CNT30273043Sorghum bicolorChenopodium quinoa26.368.3785.65209forward
CNT3029174Sorghum bicolorTheobroma cacao20.316.0580.12161forward

Expression of CNT30365475

Peptides detected in this lncRNA

>peptide 1 (53 aa)
MMPGTAGGILLWRSLRVYSATCSGVAFSSHSAPGVTMLGLSKMPSNITLFSAM*

>peptide 2 (30 aa)
MPCSPSRRISGTIPCSLRTSTIFFPSTVDW*

>peptide 3 (48 aa)
WRGDVHATSFCDLYRINLYLRPYEFEIGLYVNFESCGMSNSKPNSLVH*

Sequence

>CNT30365475
TGGCGAGGTGACGTGCATGCTACAAGTTTCTGTGATCTATATAGAATCAATTTATATCTTCGACCCTATGAATTTGAGATAGGCTTATATGTCAACTTTG
AAAGTTGTGGAATGTCAAATTCCAAGCCAAATAGCCTAGTCCACTAAGTAGATTCCAATTCCTCCAAATGAAATGTAATCAGGCCTCAAGGTAGTAGTGA
AATTGCAGTGTACTTTTCCAGCTGAACCTGTAATGGCAGACTGCCTACAGTGCCCCCGAGGAACGTACTAGCAGCAGTGGTATCATCGTCTTAGTAGCTG
TAAGAGCTGACCATGATGCCGGGAACGGCAGGAGGGATCCTTCTGTGGAGGAGCTTGAGGGTGTACTCGGCTACTTGCTCAGGAGTGGCCTTCTCCTCGC
ACTCAGCACCAGGGGTAACCATGCTGGGCTTGAGCAAGATGCCCTCAAACATCACATTGTTCTCAGCCATGTAGTAGAAGGTCTCTGCCCACACCTTCTG
TGCGACCTCGAAGGTCCTCTCGATGCCATGCTCACCATCAAGAAGGATTTCGGGCACGATTCCCTGCTCATTAAGGACGTCAACAATCTTCTTTCCATCA
ACAGTTGACTGGTAGAGGGTCTCCTCGAAGAGGATAGCACCAGAGATGTACTGTCCTAGGCCTGGGGCACTGACAAGGAGGGTCCTGTAAGCCTGGCGGT
TGGCCTCAGTGTTCTCAAGGCCAATGGAGTCAAGCCTCTTGCCGCAGGTAGCGTTCGACTCATCCATGGCAAGGATACCCCTTCCTGGTGACG