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Detailed information on CNT30365460


BLAST search results

BLAST vs Swiss-Prot:
sp|Q41373|RBS_SACHY, E-value = 4e-72

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT306440Sorghum bicolorZea mays37.7728.9391.62346forward
CNT30585439Sorghum bicolorEchinochloa crusgalli26.0937.7683.68239forward

Expression of CNT30365460

Peptides detected in this lncRNA

>peptide 1 (51 aa)
MHRILPPLLTLARLVVERRATGRVAVDLRPWNGATAVADEAITVGAIAAAM*

>peptide 2 (36 aa)
RWMMPTMDTSAAYIEAKEPTAAKGEKKKKKETKVCV*

>peptide 3 (54 aa)
MHASIDVRVCGCISLALLQRMNEDGRPEPRTKGQLALVLIMLLLPACTGSCRRC*

Sequence

>CNT30365460
AGATGGATGATGCCAACAATGGATACATCAGCAGCATATATAGAAGCAAAGGAACCAACAGCAGCAAAAGGTGAAAAAAAGAAGAAGAAAGAAACCAAGG
TGTGTGTGTGACCCCAAGGATGCAAAACCGAACGAACAGGTTGAGAGGCAGCAGCAGGCAGCCATATGCCATTAGCTCACGCAGGAGCTAGCTAGCAGTT
TAATCACTCGCTGCCCGCGGGCTTGTAGGCGATGAAGCTGACGCACTGCGTCTGCTTGATGTTGTCGAAGCCGAGGATCCGGACGTAGGCGTCCGGGTAG
GAGGCGATGGCCTCCTGCAGCTCCTTGTAGACCTGCGACGCGTCGGTGCAGCCGAACATGGGCAGCTTCCACATGGTCCAGTAGCGGCCGTCGTAGTAGC
ACGGGGAGGTGGAGTTCTCGCGGTACACGAAGCCTTCCTTGCTGAACTCGAGGCAGGGCACCCAGTTGTTGCGCAGCAGCTGCTCCTCCGTCAGCGGCGG
CAGGTACGACAGCGTCTCGAACTTCTTGTTCCCGTACGCCGGCCACACCTGCAAATTAATGCATGCATCGATCGATGTACGTGTTTGTGGTTGCATTTCG
CTAGCTCTGCTGCAAAGAATGAATGAAGATGGCCGGCCGGAGCCAAGAACGAAAGGCCAACTAGCTCTTGTGTTAATTATGTTGTTATTACCTGCATGCA
CCGGATCCTGCCGCCGTTGCTGACTTTGGCGAGGCTGGTGGTGGAGCGGCGGGCGACGGGGAGGGTGGCGGTGGACTTGAGACCCTGGAACGGAGCGACG
GCGGTGGCGGACGAGGCCATCACGGTGGGCGCCATTGCTGCTGCTATGTAGTACTAGTAGCTAGTGAGGGAGCGAGCTGAGAGTGAGCTGCTTGCTGTTT
TTGCTGCTTCTTGCTG