Detailed information on CNT30365428


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONZMAT003219, E-value = 5e-164

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30283621Sorghum bicolorTriticum aestivum26.7110093.77578forward

Expression of CNT30365428

Peptides detected in this lncRNA

>peptide 1 (79 aa)
MCKCRSHGTFLLFGLQSSHLNICCYHQDLQRRPLRPGSRPGFCSGRRALLLIGAWRSPRWPGVYKGQGHSQHELMTRAY*

>peptide 2 (79 aa)
MPGEGPRRNRSRSVPRPTHGGPLSPREQLEQSAGSRRVQGWDPRAQPSEPILFPKLRIRFADFPCLHCSIGQRLLTLET*

>peptide 3 (30 aa)
MMCRRHKGHAIRQVIMNRRISEQSPRQPFI*

>peptide 4 (44 aa)
MRPSRKSGFVAHISSRITTVIRVARTIKQTITDLMSHSQFHSSN*

>peptide 5 (42 aa)
GEGRIRATWGKISVDRGSKATLPLIMPRRVLSRLQRIQPAAR*

>peptide 6 (59 aa)
GGGTNPCDVGQDLSGSWQQGHSATYNAPSRFKSSAKDSARRPLERELRGGRLRRVGRAG*

>peptide 7 (50 aa)
MSTTECGRYSVLRIFKGRRWRTGHRAMCGALPTAGPYLRLNRFQGWQAVK*

Sequence

>CNT30365428
GGGGGAGGGACGAATCCGTGCGACGTGGGGCAAGATCTCAGTGGATCGTGGCAGCAAGGCCACTCTGCCACTTATAATGCCCCGTCGCGTTTTAAGTCGT
CTGCAAAGGATTCAGCCCGCCGCCCGTTAGAAAGGGAGCTTCGAGGCGGCCGGCTACGGCGCGTCGGCCGAGCTGGCTGAGCCAATGGCACGGGCCCTTG
GGGCGCGAACGCCCTAATGTGGGTCAGGGCGAGCGGTGGGCACAGGCGCCGGTTGCTAGCTTGGATTCTGACTTAGAGGCGTTCAGTCATAATCCGGCAC
ACGGTAGCTTCGCACCACTGGCTTTGCAACCAAGCGCGATGACCAATTGTGTGAATCAACGGTTCCTCTCGTACTAGGTTGAATTACTATCGCGGCACGG
TCATCATTACTCCCACCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGTAGAAATCACATTGCGTCAGCATCCGTGGGGA
CCATCGCAATGCTTTGTTTTAATTAAACAGTCAGATTCCCCTTGTCCGTACCAGTTCTGAGTCGGTTGTTCGATGCCCGGGGAAGGCCCCCGAAGGAACC
GTTCCCGGTCCGTCCCCCGGCCGACACACGGCGGCCCGCTCTCGCCACGTGAGCAGCTCGAGCAGTCCGCCGGGAGCCGACGGGTTCAGGGCTGGGACCC
CCGAGCCCAACCCTCAGAGCCAATCCTTTTCCCGAAGTTACGGATCCGTTTTGCCGACTTCCCTTGCCTACATTGTTCCATTGGCCAGAGGCTGCTCACC
TTGGAGACCTGATGTGGTTATGAGTACGACCGAGTGTGGACGGTACTCGGTCCTCCGGATTTTCAAGGGCCGCCGGTGGCGCACCGGACACCGCGCGATG
TGCGGTGCTCTTCCGACCGCTGGACCCTACCTCCGGCTAAACCGATTCCAGGGTTGGCAGGCTGTTAAGTAGAAAAGATAACTCTTCCCGAGGCCCCCGC
CGGTGTCTCTGGACTTCCTAACGTCGCCGTCAACCGCCACGTCCCGGCTCGGGAAATCTTAACCCGATTCCGTTTCGGGCAACACGCGAAATCGCGCTGT
CTGCCGGGGTTACCCCGTCCCTTAGGATCGGCTTACCCATGTGCAAGTGCCGTTCACATGGAACCTTTCTCCTCTTCGGCCTTCAAAGTTCTCATTTGAA
TATTTGCTGCTACCACCAAGATCTGCAACGACGGCCGCTCCGCCCAGGCTCGCGCCCCGGGTTTTGCAGCGGCCGCCGCGCCCTCCTACTCATCGGGGCA
TGGCGCTCGCCCAGATGGCCGGGTGTGTACAAAGGGCAGGGACATAGTCAACATGAGCTGATGACTCGCGCTTACTAGGCATTCCTCGTTGAAGACCAAC
AATTACAATGATCTATCCCCATCCTGATGAAATTTCCCAAGATTACCCGGGCCTGTCGGCCAAGGCTATATACTCGTTGAATACATCAGTGTAGCGCGCG
TGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATGGCCTAAACGGCCATAGTCCCTCTAAGAAGCTTGCTGCGGATGGA
TGGCTCCGCATAGCTAGTTAGCAGACTGAGGTCTCGTTCGTTAACGGAATTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCC
ATAGAATCAAGAAAGAGCTCTCAGTCTGTCAATCCTTGCTATGTCTAGACCTGGTAACCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCC
GTCACCCGTCACCACCATGGTAGGCCCCTATCCTACCATCGAAAGTTGATAGGGTAGAAATTTGAATGATGTGTCGCCGGCACAAGGGCCATGCGATCCG
TCAAGTTATCATGAATCGTCGGATCAGCGAGCAGAGCCCGCGTCAGCCTTTTATCTAATAAATGCGCCCCTCTCGGAAGTCGGGGTTTGTTGCACATATT
AGCTCTAGAATTACTACGGTTATCCGAGTAGCACGTACCATCAAACAAACTATAACTGATTTAATGAGCCATTCGCAGTTTCACAGTTCGAATTAGTTCA
TACTTGCACATGCATGGCTTAATATTTGAGACAAGCATATGACTACTGGCAGGATCAACTAGGT