CANTATAdb - search

Detailed information on CNT30365399

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30498372	Sorghum bicolor	Digitaria exilis	43.87	60.21	89.51	286	forward

Expression of CNT30365399

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MKKASMENMASRPFLISFTLRMAAWSGPLG*

>peptide 2 (79 aa)
MKRILPPLGNLHAWAWHILQTLTYSSAAHDMASLSSVASVRPHRLGVLSAAPEMTVSRLLPKGSLRCLARFSTGPSPVT*

Sequence

>CNT30365399
TTAAGTAAGTAGCACATCTCAGGCACAAATTGAAGCAGATCAATCATATCAGAGATCAGAATGAAAAGGATTCTTCCCCCTCTTGGTAATTTACACGCAT
GGGCATGGCACATTCTTCAGACCCTCACATACAGCTCAGCAGCGCATGACATGGCATCGCTCTCCAGCGTGGCGTCCGTGCGTCCTCACAGGCTGGGCGT
CCTCTCGGCGGCGCCGGAGATGACGGTGAGCAGGTTGTTGCCGAAGGGGTCGCTGAGGTGCTTGGCGAGGTTCTCGACGGGGCCTTCGCCGGTGACGTAG
GCCTGGATGAAGAAGGCGAGCATGGAGAACATGGCGAGCCGGCCGTTCTTGATCTCCTTCACCTTGAGGATGGCGGCCTGGTCGGGGCCTCTGGGATGAC
AGCGCCAGCGGCACCGAGCATGGCCCATCTGGCATGGATCAGCTCGTAGGCCTGGTACCTGCACGGCGTTGATGGCTTCTTGCTGAAGAGGGAGACAATC
TTCTGAGCCCCCGCGGTGGGCGCTGCGGTGGCGTAGCGGGAGGAGCCGGCGAAGTTGAGCTGGGTGCCCAGAATCTTCGATGGAGCGAGCGCCATTGCCG
GAGACCCACAATTCAGAGAAAGATTTGCAGGAGGGGATGCCTGATGGGTGTT