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Detailed information on CNT30365392


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9XGX1|CHS7_SORBI, E-value = 6e-79

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30281985Sorghum bicolorChenopodium quinoa42.7610.3978.63248forward
CNT30628476Sorghum bicolorVigna unguiculata39.1430.0782.38227forward
CNT30507146Sorghum bicolorNicotiana attenuata30.3416.5479.55176forward
CNT3045136Sorghum bicolorPrunus dulcis33.4531.1981.96194forward
CNT30192533Sorghum bicolorSecale cereale57.595085.03334forward
CNT30564019Sorghum bicolorActinidia chinensis34.6627.1382.59201forward
CNT3088050Sorghum bicolorVigna radiata56.2164.9482.52326forward
CNT30252036Sorghum bicolorAvena sativa40.3414.6382.91234forward
CNT3074040Sorghum bicolorBrassica juncea18.2823.9886.79106forward
CNT30466546Sorghum bicolorSaccharum spontaneum45.6999.6296.98265forward
CNT30606750Sorghum bicolorGossypium raimondii36.2127.8981.43210forward
CNT30646903Sorghum bicolorRosa chinensis24.3110.6781.56141forward
CNT30128249Sorghum bicolorCorymbia citriodora25.1721.3585.62146forward
CNT30355776Sorghum bicolorLactuca sativa35.1735.1783.33204forward
CNT30151821Sorghum bicolorPrunus persica45.8646.1880.08266forward
CNT30705527Sorghum bicolorPrunus avium33.4541.981.96194forward
CNT30593102Sorghum bicolorEragrostis curvula22.0758.9990.62128forward
CNT30114125Sorghum bicolorFicus carica45.8634.4680.83266forward

Expression of CNT30365392

Peptides detected in this lncRNA

>peptide 1 (53 aa)
MFTLCDWQQYMENNSSYYDTRQLCRQYRAHYLRYEANNHERSTTGGTRRVHGT*

Sequence

>CNT30365392
TAATAACAACGGTCTTTTATCCGTGAGCTAGCTCGCCCTTAAAATTAAGGTTCTACTACCAGGGCTTACATGCATGTTCACATTGTGCGACTGGCAACAG
TACATGGAAAATAATAGCAGCTACTACGATACACGGCAATTATGCAGACAATACAGAGCACATTATTTGCGTTACGAGGCAAATAATCACGAACGATCGA
CGACTGGTGGGACTCGGAGGGTCCACGGAACGTGACGGCGGTGATCTCGGAGCACACCACCAGGACGCGCGCCCCACGGTTGTTCTCGGCGAGGTCCTTG
GCCACGCGCAGCACCGTGCCGCCCGCGAAGCACCCCTGCTGGTACATCATCAGGCGGTTGACCGAGGGCCGCAGGCCCAGCATCTTGGTGAGCTGGTAGT
CGGCGCCCGGCATGTCGACGCCGGAGGTGGTGCAGAAGACGAGGTGAGTGATCTTGGATTTCGGCTGCCCCCACTCCTTGATCGCCTTCTGCGCCGCGGC
CTTGCCTAGCTTGGGCACCTCCACCACCACGATGTCCTGGCGGGCGTGCATGTACCGCTTCCGGATCTGCGACTTGTCGC