Detailed information on CNT30365254


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONCQUT004405, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678839Sorghum bicolorSetaria viridis98.3464.9697.3890forward
CNT30519050Sorghum bicolorJuglans regia98.6779.3894.29893forward
CNT30619379Sorghum bicolorSesamum indicum85.6499.3694.32775forward
CNT30200729Sorghum bicolorPisum sativum98.6736.7293.73893forward
CNT3048154Sorghum bicolorPrunus dulcis98.6785.1394.06893forward
CNT30224448Sorghum bicolorHordeum vulgare86.5298.9996.04783forward
CNT30444212Sorghum bicolorAegilops tauschii98.6768.6497.2893forward
CNT30206557Sorghum bicolorHelianthus annuus90.1737.8394.24816forward
CNT30413997Sorghum bicolorPapaver somniferum74.1480.3694.19671forward
CNT3036408Sorghum bicolorCucumis melo98.6784.4894.74893forward

Expression of CNT30365254

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MRPSRKSGFVAHISSRITTVIRVARTIKQTITDLMSHSQFHSSN*

>peptide 2 (30 aa)
MMCRRHKGHAIRQVIMNRRISEQSPRQPFI*

Sequence

>CNT30365254
GTGTGAGTTCTGAGGGCAGGGACGTAGTCAACGCGAGCTGATGACTCGCGCTTACTAGGCATTCCTCGTTGAAGACCAACAATTACAATGATCTATCCCC
ATCCTGATGAAATTTCCCAAGATTACCCGGGCCTGTCGGCCAAGGCTATATACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAG
GGCATCACAGACCTGTTATTGCCTCAAACTTCCATGGCCTAAACGGCCATAGTCCCTCTAAGAAGCTTGCTGCGGATGGATGGCTCCGCATAGCTAGTTA
GCAGACTGAGGTCTCGTTCGTTAACGGAATTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTC
TCAGTCTGTCAATCCTTGCTATGTCTAGACCTGGTAAGTTTCCCCATGTTGAGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT
TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTCACCCGTCACCACCATGGTAGGCCCCTATCCTACCATCGAAAGTTGATAGGGTAGAAAT
TTGAATGATGTGTCGCCGGCACAAGGGCCATGCGATCCGTCAAGTTATCATGAATCGTCGGATCAGCGAGCAGAGCCCGCGTCAGCCTTTTATCTAATAA
ATGCGCCCCTCTCGGAAGTCGGGGTTTGTTGCACATATTAGCTCTAGAATTACTACGGTTATCCGAGTAGCACGTACCATCAAACAAACTATAACTGATT
TAATGAGCCATTCGCAGTTTCACAGTTCGAATTAGTTCATACTTGCACATGCATGGCTTAATATTTGAGACAAGCATATGACTACTGGCAGGATCAACTA
GGTAG