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Detailed information on CNT30365247


BLAST search results

BLAST vs Swiss-Prot:
sp|Q0IQF7|RS16_ORYSJ, E-value = 8e-70

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697810Sorghum bicolorOryza sativa49.9359.7991.15339forward
CNT30295032Sorghum bicolorTriticum aestivum45.5159.285.44309forward
CNT30391876Sorghum bicolorTriticum turgidum27.5483.4888.24187forward
CNT30562499Sorghum bicolorActinidia chinensis23.1270.7285.35157forward
CNT30555324Sorghum bicolorOryza glaberrima38.4471.1290.04261forward
CNT30438780Sorghum bicolorAegilops tauschii38.4432.588.51261forward
CNT30247768Sorghum bicolorAvena sativa28.2831.5889.58192forward
CNT30663140Sorghum bicolorTriticum dicoccoides25.4825.0788.44173forward
CNT30472632Sorghum bicolorSaccharum spontaneum38.595.3696.18262forward
CNT30136796Sorghum bicolorLolium perenne20.1820.0688.32137forward
CNT30232050Sorghum bicolorAnanas comosus48.628.9782.73330forward
CNT30721366Sorghum bicolorTriticum spelta3850.1987.21258forward
CNT30151249Sorghum bicolorBrachypodium distachyon37.8549.3393257forward
CNT30104226Sorghum bicolorOryza rufipogon38.4454.690.42261forward
CNT30581659Sorghum bicolorEchinochloa crusgalli26.5127.9586.67180forward
CNT30118078Sorghum bicolorOryza nivara49.9353.9891.15339forward

Expression of CNT30365247

Peptides detected in this lncRNA

>peptide 1 (96 aa)
MSMSLNLDRPASRMGSKALRRSISGRISSIGTPFTLISPRPGFVYATATAVFFRPKHWTVPGVGRLSTDMVAVVAAGFAAAALGFWRRRLWGEGCGG

>peptide 2 (75 aa)
MKPRTTRAILQICDPAKQSLNGKTFGTWRGLHDHRTSWARSAWGRRRAPWRRPGGWRRSATSSRRRGRGSACRCP*

Sequence

>CNT30365247
CTAATAGGCGACCATATCATAATTACTCGACAGAGATAATGACAAGAAAAACATACTTCAGAGACTAATTAATAGTCTTCAAAATCTCCTCACATTTAAT
ACCACAATGCCAGTCTAAAACATTAAGGTAGGTAAAGCAGAAGCTAGATATAGATAAGCAGCTCCATGGACAGGAAATGAAGCCACGAACAACCAGAGCG
ATCTTGCAAATTTGCGACCCAGCAAAGCAATCGCTCAACGGTAAGACTTTTGGAACCTGGCGCGGGCTCCACGACCACCGAACTTCTTGGGCTCGCAGCG
CCTGGGGTCGGCGACGAGCCCCTTGGCGACGGCCTGGCGGATGGCGTAGATCTGCGACGTCTTCCCGCCGCCGCGGACGCGGATCCGCATGTCGATGTCC
TTGAACCTCGACCGGCCGGCCAGCAGGATGGGCTCGAAGGCCTTGAGGCGGAGCATCTCCGGGCGGATCAGCTCGATCGGGACGCCGTTCACCTTGATCA
GCCCGCGCCCCGGCTTCGTGTACGCCACGGCCACGGCGGTCTTCTTCCGCCCGAAGCACTGGACCGTGCCCGGGGTAGGGCGGCTCAGCACGGACATGGT
TGCGGTGGTGGCTGCTGGGTTCGCAGCGGCGGCGCTAGGGTTTTGGCGGCGGCGGCTTTGGGGGGAGGGGTGCGGCGGA