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Detailed information on CNT30365203


BLAST search results

BLAST vs Swiss-Prot:
sp|P32112|SAHH_WHEAT, E-value = 1e-32

BLAST vs NONCODE:
NONBRAT004190, E-value = 3e-15

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675638Sorghum bicolorSetaria viridis48.8421.2693.33105forward
CNT30702258Sorghum bicolorQuercus lobata73.4933.6280.38158forward
CNT30375086Sorghum bicolorArabidopsis thaliana76.7423.0182.42165forward
CNT30619260Sorghum bicolorSesamum indicum75.3515.2183.33162forward
CNT3020603Sorghum bicolorCitrullus lanatus74.8810.482.61161forward
CNT3072357Sorghum bicolorQuercus suber73.4915.3879.75158forward
CNT30380073Sorghum bicolorManihot esculenta74.8815.683.23161forward
CNT30402445Sorghum bicolorBeta vulgaris55.3526.881.51119forward
CNT30200315Sorghum bicolorPisum sativum76.7431.9886.06165forward
CNT30505192Sorghum bicolorNicotiana attenuata75.3528.6780.86162forward
CNT30709695Sorghum bicolorGlycine max26.0516.7787.556forward
CNT30544223Sorghum bicolorBrassica napus48.3723.7482.69104forward
CNT3076654Sorghum bicolorBrassica juncea75.3534.6980.86162forward
CNT30259492Sorghum bicolorBrassica rapa35.8121.9488.3177forward
CNT30612558Sorghum bicolorArabis alpina24.6514.0688.6853forward
CNT30607325Sorghum bicolorGossypium raimondii74.8812.4883.85161forward
CNT30355186Sorghum bicolorLactuca sativa30.78.9786.3666forward
CNT30645006Sorghum bicolorCannabis sativa74.8819.5681.37161forward
CNT3021984Sorghum bicolorPopulus trichocarpa50.235.0585.19108forward
CNT30104292Sorghum bicolorOryza rufipogon50.2318.7293.52108forward
CNT30117878Sorghum bicolorOryza nivara48.8423.3392.38105forward
CNT30723196Sorghum bicolorLupinus angustifolius76.2820.5882.93164forward

Expression of CNT30365203

Peptides detected in this lncRNA

>peptide 1 (58 aa)
MASSTPKVHQTTLSKDNDASFGLREHPAVSLGLDGDALNTRVEVENWIWAGGTEWEEGR

>peptide 2 (54 aa)
TWLVNEQDITKLGWPVAHPRFIKRPSARTMMPVLVSGNTQRSVWGLMVMRLTPG*

Sequence

>CNT30365203
ACCTGGTTAGTGAATGAGCAGGACATTACAAAGCTAGGATGGCCAGTAGCACACCCAAGGTTCATCAAACGACCCTCAGCAAGGACAATGATGCCAGTTT
TGGTCTCAGGGAACACCCAGCGGTCAGTCTGGGGCTTGATGGTGATGCGCTTAACACCAGGGTAGAAGTCGAGAATTGGATCTGGGCAGGGGGGACGGAA
TGGGAGGAGGGGAGG