Detailed information on CNT30365067


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LM59|GLYC6_ARATH, E-value = 4e-61

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30524209Sorghum bicolorSetaria italica47.8515.5895.5289forward
CNT3070360Sorghum bicolorQuercus suber25.1753.3382.89152forward
CNT30179070Sorghum bicolorSecale cereale37.4246.0389.82226forward
CNT3074841Sorghum bicolorBrassica juncea29.4735.9684.27178forward
CNT30650801Sorghum bicolorRosa chinensis30.1313.8588.46182forward
CNT30117918Sorghum bicolorOryza nivara42.3828.4889.45256forward

Expression of CNT30365067

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MPSEYLLVSGEPSASMTAKEVKFSEAMSSMPRRWRRFSRSRRS*

>peptide 2 (38 aa)
EIIVINERCTSAATSPLMCAMSQSSRAPTLSAMALSLE*

Sequence

>CNT30365067
TCGAGATCATTGTTATCAATGAACGTTGTACCTCCGCGGCGACGAGTCCGCTGATGTGCGCCATGTCGCAGAGCAGCAGGGCCCCGACCTTGTCGGCGAT
GGCCCTGAGCCTGGAGTAGTCCCAGTCCCTCGGGTACGCGCTGCCACCGCAGATGATGAGCTTGGGGCGGAAGTCAAGTGCCTTCTCCTCGAGTTTCTCG
TAGTCGATGTACCCGGTGGCGGAGATCTTCTTCCCGCCGGCAGTATAGTAGCCGTGAGTGAGGTGTCCGCCGGAGGGAAGGCAGCGAGCGCGCGTGACCG
GCAGAGGTTCTCGATCTCGTCGATGACGTCGTTGCCGCCGTAGTAGCGGGCACCGGGCATGCCCTCAGAGTACTTGTTGGTGAGCGGAGAGCCGAGTGCC
TCCATGACGGCGAAGGAGGTGAAGTTCTCGGAGGCGATGAGCTCGATGCCGCGACGCTGGCGCCGCTTCTCGCGCTCCAGGAGGTCGTAGATCTCCGGGT
CGGCGCCGGCGAGCGGGGTTAGCCCCCATGTGGCGACGGGGTCCATGGCGGCGGCGTGGGAGGGGTTGACAGGACTGGCGGAGGCGAGGAGGGGGCGGGG
GGCG