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Detailed information on CNT30364985


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 0.0

BLAST vs NONCODE:
NONMEST001181, E-value = 1e-153

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30641251Sorghum bicolorNymphaea colorata86.7450.3184.27890forward
CNT30532219Sorghum bicolorEucalyptus grandis83.8251.1384.07860forward
CNT30379426Sorghum bicolorManihot esculenta83.2473.7583.26854forward
CNT30540600Sorghum bicolorBrassica napus86.8452.2383.39891forward
CNT30238962Sorghum bicolorBrassica oleracea86.7446.0483.15890forward
CNT3079055Sorghum bicolorBrassica juncea83.8279.4182.79860forward
CNT30262381Sorghum bicolorBrassica rapa86.8455.6283.05891forward
CNT30460578Sorghum bicolorSaccharum spontaneum99.8151.1794.531024forward
CNT30477817Sorghum bicolorArabidopsis halleri86.7483.1882.36890forward
CNT30120688Sorghum bicolorCitrus clementina83.0478.0283.1852forward
CNT30330418Sorghum bicolorDioscorea rotundata85.8787.9282.86881forward
CNT30595410Sorghum bicolorEragrostis curvula85.8764.5987.51881forward
CNT3066362Sorghum bicolorSelaginella moellendorffii86.9490.4783.63892forward

Expression of CNT30364985

Peptides detected in this lncRNA

>peptide 1 (61 aa)
MSRCWSGGMPSLSWIFALTLSIVSELSTSSVIVFPVSVFTKICIPPRRRKTRCRVDSFWIL*

>peptide 2 (88 aa)
MKSGFLLDVVICQGAPVLKLLPSEDEPLLIWRNPFLVLDLGLHIVNGVRALHFQRDCLASQCLDKDLHAPPKPQDKMKSGFLLDVVVS*

>peptide 3 (53 aa)
MTKHLVELDIESLHDEALNRTGYVSNHRILIASQQDIFLLPQLTRPPRRRRTR*

>peptide 4 (60 aa)
MQGRLLLDIIVSQGAAILELLASKDEPLLVRWNTLLILNLGLDIVDSVRTLNLQCDCLAS*

>peptide 5 (31 aa)
MVSELSTSNVIVLPVSVLTKICMPPLSRRTR*

>peptide 6 (35 aa)
MSLCWSGGMPSLSWILALTLSMVSELSTSRVMVLPV

Sequence

>CNT30364985
CATGACGAAACACTTAGTAGAACTGGATATAGAAAGTTTACACGACGAAGCACTTAATAGAACTGGATACGTCTCTAACCATAGAATTTTAATAGCTTCG
CAGCAGGACATATTCCTACTACCTCAGTTAACACGGCCACCACGGAGGCGCAGGACGAGATGAAGAGTGGATTCCTTCTGGATGTTGTAATCTGCCAAGG
TGCGCCCGTCCTCAAGCTGCTTCCCAGCGAAGATGAGCCTCTGCTGATCTGGAGGAATCCCTTCCTTGTCCTGGATCTTGGCCTTCACATTGTCAATGGT
GTCAGAGCTCTCCACTTCCAACGTGATTGTCTTGCCAGTCAGTGTCTTGACAAAGATTTGCATGCCCCCCCTAAGCCGCAGGACAAGATGAAGAGTGGAT
TCCTTCTGGATGTTGTAGTCAGCTAAGGTGCGCCCATCCTCCAGCTGCTTCCCAGCAAAGATGAGCCGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCCT
GGATCTTCGCCTTGACGTTGTCAATTGTGTCAGAGCTCTCAACCTCAAGCGTGATAGTCTTCCCAGTAAGTGTCTTCACAAAGATCTGCATCCCACCTCG
GAGGCGTAAAACCAGATGCAGGGTAGACTCCTTCTGGATATTATAGTCAGCCAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGCCTCTGC
TGGTCCGGTGGAATACCCTCCTTATCCTGAATCTTGGCCTTGACATTGTCGATAGTGTCAGAACTCTCAACCTCCAGTGTGATTGTCTTGCCAGTTAATG
TCTTGACAAAGATTTGCATGCCACCCCTCAGGCGCAAGACAAGATGGAGGGTAGACTCCTTCTGGATATTGTAGTCAGCCAGAGTGCGGCCATCCTCTAG
CTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCCGGGGGGATGCCCTCCTTGTCTTGGATCTTGGCTTTAACATTGTCGATGGTGTCTGAACTCTCAACC
TCGAGAGTGATGGTCTTGCCGGTGAG