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Detailed information on CNT30364944


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8LC30|RAP21_ARATH, E-value = 3e-11

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692625Sorghum bicolorOryza sativa4.3522.429050forward
CNT30708948Sorghum bicolorGlycine max9.5720.1585.45110forward
CNT30563605Sorghum bicolorActinidia chinensis9.322.6288.79107forward

Expression of CNT30364944

Peptides detected in this lncRNA

>peptide 1 (68 aa)
MSIAAAMRTTRCRKLSLAGARRRDKRSFFVMQNQNRKKFGNQTFQRTNLRCVADDFCSDRSNLTVELDG

>peptide 2 (47 aa)
MVGRGGGSTRYKRLECFRELLIRGGGGGDLVCVVVLVHVDSCGHEDY*

>peptide 3 (37 aa)
MTFSTGRAVRKNNRQLNQEISTYLLLHHNTGRRCTSY*

Sequence

>CNT30364944
AGAGGAATTACTTAAGAAGCAACTGATAGATCATAACACTTAATAACACAGGATTACAATGACTTTCTCGACTGGCCGTGCCGTGAGAAAAAACAACCGG
CAGCTCAACCAGGAGATTAGCACATACTTACTGCTGCATCACAACACTGGACGACGATGTACTAGCTACTAGTTTACTCACTGCTACTCGCAGCCGCCAT
GGCCGATGTCTAAAATGCCATCGAGCCACCGCCGCTGCAAACCCCAAATCGAAAATTACACAGAGCTATCATTGAGCTGACACTGACTGAATCTTGCTGC
TGCTACTACTATAGCAGTTGTAGTTGATCGTTCACGAGAGGATGGAATCCCAGTCGATCTCCCAGGACGGGTACTTGCGGAGGTGGAAGGCGGCCTTGTC
GTAGGCGAGCGCCGCGTCCTCGGCGGTGTCGAAGGTGCCGAGCCACAGCCGGGTGCGGTTCTTGGGGAGGCGGATCTCTGCCACCCACTTGCCCCAGTGG
CGCTGGCGGACGCCGCGGTACAGCTTCGACTGCGCCGGCGCCAGCGGCGGCGATCCGGACTGCTTCATCGGCTGCGCCCGCGGGCCCAGGAACGCCGCGT
GCAGACCCCTCTGCTGCTGCTGCTGCTGCTGGAACATGAACTGGGCCTGGATCTGCTGGATCTGGGCCGGGCCGAGCTGGTTCAGGCCCATCTGCCCAAC
CATGCTCGGCGCCGCGTAAGGCGACGAGTAGAGTGGCGGCGGGGGTGGGAAGAGGCGAGGTGGCGAAGCTGGTGTAGGAGGGTGTAGGCATGTAAGAATC
TTGGGACATGGATGGAGAAGACGAGTAGCGATGGTAGGGAGAGGAGGAGGAAGCACTCGTTATAAAAGGCTCGAGTGCTTTCGCGAGCTCCTCATCCGAG
GGGGAGGAGGAGGCGATCTGGTGTGCGTTGTAGTACTTGTACATGTCGATAGCTGCGGCCATGAGGACTACTAGATGCAGAAAGCTAAGCTTGGCTGGAG
CTAGAAGAAGAGATAAAAGGAGCTTTTTTGTTATGCAAAATCAAAATAGGAAAAAGTTTGGAAATCAGACCTTTCAGAGAACAAACCTGCGCTGCGTTGC
TGATGATTTTTGCTCGGATCGCTCAAACCTCACCGTGGAGCTGGATGGGA