Detailed information on CNT30364938


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671134Sorghum bicolorSetaria viridis11.2340.2397.09103forward
CNT30504332Sorghum bicolorNicotiana attenuata9.9226.5384.6291forward
CNT30287172Sorghum bicolorTriticum aestivum13.745085.71126forward
CNT30658930Sorghum bicolorTriticum dicoccoides13.7452.7285.71126forward
CNT308418Sorghum bicolorZea mays7.5231.0886.9669forward
CNT30713155Sorghum bicolorMalus domestica golden10.1436.6183.8793forward
CNT30686546Sorghum bicolorTriticum urartu9.0535.9385.5483forward

Expression of CNT30364938

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MTVNDMPLCLYHLEFGERMISRSLKAKEKEYST*

>peptide 2 (39 aa)
MAARAAPMKGPTQKIHCKTITQTGRWYQYPELYIIPYTA*

>peptide 3 (48 aa)
MVAPGMIPVVDDGSAKAITLGVAGGDNIGTTTVAHVKPLLEALHHSSST

>peptide 4 (49 aa)
MIAAKWKDSGYMSDISVETLYTEWYRTVGNRKLVREESTVVPLTWSLQA*

>peptide 5 (30 aa)
MEEKHTQLSSVQEYTKSWVQITEQCSSEQS*

Sequence

>CNT30364938
ACGGGAACCCTTGCAACAAACGGTAATAACTTAAATTCTCCACGATGGAAGAAAAACATACACAGCTGAGCTCGGTACAGGAATACACAAAGTCCTGGGT
TCAGATTACAGAACAGTGCAGCAGTGAGCAATCTTGAAGAGAGACGAGGAATCGACTTTGGACCTAGGCGTGGGCAGGGCAGACAAAGACATCACAGGAA
GACGCTCGTTCTTCGGACTGGCATGTCTCGGCACGGCCGCGGCAGCTTAAGACCAGCTTAAGACCTGCTCTTGAACGGGATGGCCCTGATGATCACCTGG
TGGTAGATGGCAGCCAGGGCAGCACCAATGAAGGGGCCGACCCAGAAGATCCACTGCAAAACAATCACACAAACAGGAAGATGGTATCAATACCCAGAAT
TATACATTATCCCATACACAGCCTAGATTGATGCATGCCAACTACAATGGATGGAGACAAGCCTTTGTGATAAGATTAACACACATCTATAACTATAGGT
CATGACTGTCAATGACATGCCACTGTGTCTATATCATTTGGAGTTTGGTGAGCGAATGATTAGTCGTAGTTTGAAGGCGAAAGAAAAAGAATACAGCACC
TAGTTAGAATCAGAATAGACTTTCTAGAGCATGCCACTATGATTGCTGCAAAATGGAAAGACAGTGGCTACATGTCTGATATTTCCGTGGAGACATTATA
CACCGAGTGGTACCGAACTGTTGGGAATCGAAAGTTGGTGAGAGAGGAATCGACAGTAGTTCCACTCACATGGTCGCTCCAGGCATGATCCCTGTTGTAG
ATGATGGCAGCGCCAAGGCCATCACCCTTGGTGTAGCCGGGGGCGACAACATTGGCACCACCACCGTTGCCCATGTAAAGCCCCTGCTGGAAGCCCTTCA
CCACTCCAGCTCCACAG