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Detailed information on CNT30364844


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8H7U1|TBB2_ORYSJ, E-value = 3e-84

BLAST vs NONCODE:
NONBNAT005393, E-value = 5e-74

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30670745Sorghum bicolorSetaria viridis55.2837.9594.19241forward
CNT30377262Sorghum bicolorArabidopsis thaliana82.3461.4785.24359forward
CNT30486254Sorghum bicolorOlea europaea41.5147.2686.74181forward
CNT30442409Sorghum bicolorAegilops tauschii69.545.2288.45303forward
CNT30252641Sorghum bicolorAvena sativa85.0945.6387.87371forward
CNT30608822Sorghum bicolorGossypium raimondii78.2150.982.4341forward
CNT30209019Sorghum bicolorHelianthus annuus84.444.0782.88368forward
CNT30722476Sorghum bicolorTriticum spelta69.545.2987.79303forward
CNT30369350Sorghum bicolorOryza glumipatula64.4540.4386.12281forward
CNT30570854Sorghum bicolorVitis vinifera33.4972.6486.99146forward
CNT30706519Sorghum bicolorPrunus avium82.843.5581.99361forward
CNT3033661Sorghum bicolorTheobroma cacao43.8191.8386.91191forward
CNT3057373Sorghum bicolorAmborella trichopoda55.2844.2280.5241forward
CNT30575061Sorghum bicolorOryza barthii64.4530.9186.12281forward
CNT30117026Sorghum bicolorOryza nivara28.6718.691.2125forward
CNT30333708Sorghum bicolorCynara cardunculus61.0132.8486.47266forward

Expression of CNT30364844

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MSWVSCTHHILGIPHLLGQLGDGEGSVLLGSS*

>peptide 2 (44 aa)
CSLTRLNISWIEVELPMNVDAIFRPVGGMSHTLDFTLFGIHSTK*

>peptide 3 (46 aa)
LLAHTPEHLLDRGGVADECGRHLQARGRDVAHTRLHVVRDPLHEVG*

>peptide 4 (82 aa)
MWTPSSGPWEGCRTHSTSRCSGSTPRSRMSSCSAHSASAHPPPWCSSSHGTWLMLSGSAHVVGQLHTSYSWHPTSAGSARGR*

Sequence

>CNT30364844
TTGCTCGCTCACACGCCTGAACATCTCCTGGATCGAGGTGGAGTTGCCGATGAATGTGGACGCCATCTTCAGGCCCGTGGGAGGGATGTCGCACACACTC
GACTTCACGTTGTTCGGGATCCACTCCACGAAGTAGGATGAGTTCTTGTTCTGCACATTCAGCATCTGCTCATCCACCTCCTTGGTGCTCATCTTCCCAC
GGAACATGGCTGATGCTGTCAGGTAGCGCCCATGTCGTGGGTCAGCTGCACACATCATATTCTTGGCATCCCACATCTGCTGGGTCAGCTCGGGGACGGT
GAGGGCTCGGTACTGCTGGGATCCTCTTGATGTCAGTGGTGCAAAACCAACCATGAAGAAATGGAGGCGAGGCGAGGCGAGGCCTGGGGAGCAGAGGTCT
GGAGGGTGGTGGAGGGCTCCGCGCGCGGCTGGGGAC