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Detailed information on CNT30364833


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 2e-157

BLAST vs NONCODE:
NONMEST001181, E-value = 2e-112

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30519947Sorghum bicolorSetaria italica69.5678.188.11681forward
CNT30553813Sorghum bicolorOryza glaberrima70.2873.5886.19688forward
CNT30141474Sorghum bicolorLolium perenne70.3874.9790.28689forward

Expression of CNT30364833

Peptides detected in this lncRNA

>peptide 1 (58 aa)
MSRCWSGGMPSLSWILALTLSMVSEDSTSRVIVLPVKVLTKICMPPLRRSTKWRVDSF*

>peptide 2 (53 aa)
MPSLSWILALTLSMVSEDSTSRVIVLPVRVFTKICMPPLRRSTKWRVLSFWML*

>peptide 3 (34 aa)
MPSLSWILALTLSMVSEDSTSRVIVLPVRVFTKIC

>peptide 4 (31 aa)
MLPYKYFRLTNASMTDHTDTSKTGHGRNKRH*

Sequence

>CNT30364833
TGACATAGCAAAAAACAATATTCAACACATATTTTAAATTCCAACATCACATTTATTTAGAATTAAGCCATATGCTGCCGCACTATAGTTTAGGGTAGAA
CACAGAGGAACACAACCGGTCCATGAAACGAACTCAGACACGACACAGACCATACAAATGCTTCCATACAAATACTTCAGACTGACCAACGCTTCAATGA
CGGACCATACAGATACTTCAAAGACTGGACATGGCCGAAACAAGAGGCACTAGACAACCCAGGTGCGGCAGCAGCTTCAACGACTGATGGCTTACTGACC
ACCGCGAAGACGGAGCACCAGGTGGAGGGTGCTCTCTTTCTGGATGTTGTAATCCGCAAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGA
CGCTGCTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCCGAGGACTCCACCTCAAGGGTGATCGTCTTGCCAG
TAAGGGTCTTCACGAAGATCTGCATGCCTCCCCTAAGGCGCAGCACCAAGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGCAAGCGTGCGCCCGTC
CTCGAGTTGCTTGCCGGCAAAGATGAGCCGCTGCTGGTCTGGGGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCAGAAGAC
TCCACCTCAAGGGTGATTGTCTTGCCAGTCAAGGTCTTGACAAAGATCTGCATGCCTCCCCTGAGGCGCAGCACCAAGTGGAGGGTTGACTCCTTCTGAA
TGTTGTAGTCGGCAAGCGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAGATAAGCCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGGATCTTGGC
CTTGACGTTGTCTATGGTGTCAGAAGACTCCACCTCAAGGGTGATAGTCTTGCCGGTGAGGGTCTTCACAAAGATCTGC