Detailed information on CNT30364822


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 3e-148

BLAST vs NONCODE:
NONMEST001181, E-value = 2e-114

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30562231Sorghum bicolorActinidia chinensis77.4471.8684.98659forward
CNT30603728Sorghum bicolorOryza punctata77.0960.5787.96656forward

Expression of CNT30364822

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MSLCWSGGMPSLSWILALTLSMVSELSTSRVMVLPV

>peptide 2 (61 aa)
MSRCWSGGMPSLSWIFALTLSIVSELSTSSVIVFPVSVFTKICIPPRRRKTRCRVDSFWIL*

>peptide 3 (73 aa)
MKSGFLLDVVICQGAPILQLLPSKDEPLLVRWDALLVLDLRLDVVNCVRALNLKRDSLPSKCLHKDLHPTSEA*

>peptide 4 (40 aa)
MVSELSTSSVIVLPVRVFTNICMPPLKRKTRWRVDSFWIL*

>peptide 5 (53 aa)
MTKHLVELDIESLHDEALNRTGYVSNHRILIASQQDIFLLPQLTRPPRRRRTR*

Sequence

>CNT30364822
AACGCAACAGGCTATATATAAAGTATAGCCAACAGATTATATAGAAAAGTTTACATGACGAAACACTTAGTAGAACTGGATATAGAAAGTTTACACGACG
AAGCACTTAATAGAACTGGATACGTCTCTAACCATAGAATTTTAATAGCTTCGCAGCAGGACATATTCCTACTACCTCAGTTAACACGGCCACCACGGAG
GCGCAGGACGAGATGAAGAGTGGATTCCTTCTGGATGTTGTAATCTGCCAAGGTGCGCCCATCCTCCAGCTGCTTCCCAGCAAAGATGAGCCGCTGCTGG
TCAGGTGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTGTCAATTGTGTCAGAGCTCTCAACCTCAAGCGTGATAGTCTTCCCAGTAAGTGTCT
TCACAAAGATCTGCATCCCACCTCGGAGGCGTAAAACCAGATGCAGGGTAGACTCCTTCTGGATATTATAGTCAGCCAGGGTGCGGCCATCCTCTAGCTG
CTTGCCAGCAAAGATGAGTCTCTGCTGATCCGGGGGAATGCCCTCCTTATCCTGAATCTTGGCCTTGACATTGTCGATGGTGTCAGAGCTCTCAACCTCC
AGTGTGATTGTCTTGCCCGTAAGAGTCTTCACAAATATCTGCATGCCACCCCTCAAGCGCAAGACAAGATGGAGGGTAGACTCCTTCTGGATATTGTAGT
CAGCCAGAGTGCGGCCATCCTCTAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCCGGGGGGATGCCCTCCTTGTCTTGGATCTTGGCTTTAACATT
GTCGATGGTGTCTGAACTCTCAACCTCGAGAGTGATGGTCTTGCCGGTGAG