Detailed information on CNT30364747


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7XA61|TIP21_ORYSJ, E-value = 5e-98

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30641375Sorghum bicolorNymphaea colorata10.5323.6882.9894forward
CNT30443838Sorghum bicolorAegilops tauschii15.3428.4294.16137forward
CNT30352266Sorghum bicolorEragrostis tef13.2122.2688.14118forward
CNT3039278Sorghum bicolorCucumis melo10.9724.7583.6798forward
CNT30116026Sorghum bicolorOryza nivara12.7721.6785.96114forward

Expression of CNT30364747

Peptides detected in this lncRNA

>peptide 1 (95 aa)
SKRKSHLFFHFKNRRSDEIFTSILPRKKKGTEYKGPYAWTRYHRHTLHTNHLTWRRAKQTTTQIQTLRSIQIQTAQTAGALRRSPGRRPAGSHRR*

>peptide 2 (51 aa)
RNVNHICFFTSRTADRTRSLHRFYPEKKRELNTKDHMHGRDIIDTHYIQTI*

>peptide 3 (43 aa)
MDEISSTHITYKPFNVAKSKANDDADPNAAFNSNPNSPDGRST*

>peptide 4 (80 aa)
MLAPTMKPMAMGAMVPREPFLGSAAVAYTVYTSAKVMMISNTTPSSSLIPDTPCVGMALPWVTNLRSRHATEAPSSCATQ*

>peptide 5 (67 aa)
MPVRMVMWPPTASPKVTAGFRCPPEMLAAMETPTKSASACAIAIATRPAGSRAPSLVSCPARGHQDR*

Sequence

>CNT30364747
CTCGAAACGTAAATCACATTTGTTTTTTCACTTCAAGAACCGCAGATCGGACGAGATCTTTACATCGATTTTACCCCGAAAAAAAAAGGGAACTGAATAC
AAAGGACCATATGCATGGACGAGATATCATCGACACACATTACATACAAACCATTTAACGTGGCGAAGAGCAAAGCAAACGACGACGCAGATCCAAACGC
TGCGTTCAATTCAAATCCAAACAGCCCAGACGGCCGGAGCACTTAGGCGTAGTCCTGGTCGGCGACCTGCTGGTAGCCACCGCCGATGAGCGGGCCGACC
CAGTAGACCCAGTTGCCGGCGAAGTTGCCCGCGGCGACGGCGGGGATGTTGGCGCCGACGATGAAGCCGATGGCGATGGGCGCGATGGTGCCGAGGGAGC
CCTTCTTGGGGTCGGCGGCGGTGGCGTACACGGTGTACACGAGCGCGAAGGTGATGATGATCTCGAACACCACGCCCTCGAGCTCGCTGATCCCGGACAC
GCCGTGCGTCGGGATGGCCTTGCCGTGGGTCACGAACTTGAGGAGCAGGCACGCCACGGAGGCACCCAGCAGCTGCGCCACCCAGTAGAAGATGCCCGTC
AGGATGGTGATGTGGCCGCCCACGGCCAGCCCGAAGGTCACGGCCGGGTTCAGGTGCCCGCCGGAGATGTTGGCGGCGATGGAGACGCCCACGAAGAGCG
CCAGCGCGTGTGCGATCGCGATCGCCACCAGACCGGCAGGGTCCAGAGCGCCGTCATTGGTCAGTTGCCCTGCACGTGGACATCAGGACAGGTAATTGTT
CAGCATCGTTCCATGCATTGAACTAGGCACACAGACGAATTAAAGTCAACCATTTGAGCCTGAGCATGGCTGGAACAAGTATATATATATATA