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Detailed information on CNT30364720


BLAST search results

BLAST vs Swiss-Prot:
sp|P38562|GLNA4_MAIZE, E-value = 8e-51

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691310Sorghum bicolorOryza sativa23.0349.6692.47146forward
CNT30296689Sorghum bicolorTriticum aestivum32.6539.2885.99207forward
CNT30225888Sorghum bicolorHordeum vulgare18.9323.1792.5120forward
CNT30392802Sorghum bicolorTriticum turgidum24.4521.2983.87155forward
CNT30552642Sorghum bicolorOryza glaberrima27.9227.6691.53177forward
CNT30250445Sorghum bicolorAvena sativa31.736.8186.57201forward
CNT301731Sorghum bicolorZea mays27.4430.0587.36174forward
CNT30683585Sorghum bicolorTriticum urartu24.4524.4183.23155forward
CNT30351207Sorghum bicolorEragrostis tef29.8128.9984.66189forward
CNT30369697Sorghum bicolorOryza glumipatula27.9228.9791.53177forward
CNT30575398Sorghum bicolorOryza barthii23.9725.5590.79152forward
CNT30115740Sorghum bicolorOryza nivara27.9246.5891.53177forward

Expression of CNT30364720

Peptides detected in this lncRNA

>peptide 1 (72 aa)
ESDHLYNAMHEDAASTERYHKCGTAIIGGLHKKKKKVGGDHPSGRTAWNGSGKRQSFYVFCFGTPRPDPNSS*

>peptide 2 (32 aa)
MQRPGHCRGTNRHETASWMEESFRFRASRGWC*

>peptide 3 (36 aa)
KATTYTMQCMRMQQVLKGTTSVVRPLLEDYTRRRRR*

>peptide 4 (29 aa)
MCSLCRNFSFSMAALITSYPPSFLMDLVL*

Sequence

>CNT30364720
GGAAAGCGACCACTTATACAATGCAATGCATGAGGATGCAGCAAGTACTGAAAGGTACCACAAGTGTGGTACGGCCATTATTGGAGGATTACACAAGAAG
AAGAAGAAGGTAGGAGGAGATCACCCAAGCGGACGGACGGCATGGAATGGAAGTGGGAAGCGTCAAAGTTTTTATGTGTTTTGTTTTGGCACACCACGAC
CTGACCCAAATTCTAGCTAAATTGCAGTAGTAGAGTAGTATAAGCAAACGGAACGGGAAGGAACAATTGTTGCGCAAATCGCTGGACGGGACCCTGCAAT
GCAACGGCCGGGACACTGCCGCGGAACAAACCGACACGAGACGGCGAGCTGGATGGAGGAAAGCTTCCGCTTCAGGGCTTCCAGAGGATGGTGTTGATGT
CGGCGGTCTCGTGCCTGCCGGTGAGGCGGCGCTCGTTGCCCTCGCCGTAGGCCGCGATGTGCTCCTTGTGCCGCAACTTCAGCTTCTCAATGGCGGCCTT
GATCACCTCGTACCCGCCCTCGTTCCTCATGGACTTGGTGCTGTAGTTGGTGTGTGCGCCGGCACCGTTCCAGTCACCAGGGATGGGCTTTGGGTCGAAT
GTCAACACCACACCGGCGATCTCGGTGATCCTCT