Detailed information on CNT30364601


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30709030Sorghum bicolorGlycine max30.8818.8885.7184forward
CNT30301323Sorghum bicolorTriticum aestivum31.9917.5495.487forward
CNT30657714Sorghum bicolorTriticum dicoccoides25.749.4587.1470reverse complement
CNT30650814Sorghum bicolorRosa chinensis27.5725.9586.6775forward
CNT30344011Sorghum bicolorEragrostis tef40.817.2692.79111forward
CNT30575210Sorghum bicolorOryza barthii31.9911.4597.787forward
CNT30115465Sorghum bicolorOryza nivara40.0710.690.83109forward
CNT30592968Sorghum bicolorEragrostis curvula32.3512.1996.5988forward

Expression of CNT30364601

Peptides detected in this lncRNA

>peptide 1 (54 aa)
GEEDPVEEQRGGDEERVPLRLHDGLLVAEIMPRRRPSRPGSVSSSSMMASAPAA*

>peptide 2 (34 aa)
MRSAFRCDFMMDFWWRRSCPGAGRRGPAASAAAA*

Sequence

>CNT30364601
GGAGAAGAGGATCCAGTAGAGGAGCAGCGCGGCGGCGATGAGGAGCGCGTTCCGCTGCGACTTCATGATGGACTTTTGGTGGCGGAGATCATGCCCCGGC
GCAGGCCGTCGAGGCCCGGCAGCGTCAGCAGCAGCAGCATGATGGCCTCCGCGCCCGCCGCGTAGCCCAGCACCACCCACTCCAGCGCCATGGCCGCCTC
CGACGACGAATCGAGTCCCTGGGTTTCGATCTGGGTCGGGAGAGGGTTTGGGAGGAGATTTGGGGGATCGGG