Detailed information on CNT30364531


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SK39|SBP3_ARATH, E-value = 1e-24

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691502Sorghum bicolorOryza sativa29.3824.6796.8194forward
CNT30671312Sorghum bicolorSetaria viridis32.531.7194.23104forward
CNT30519660Sorghum bicolorSetaria italica56.8827.294.51182forward
CNT30708893Sorghum bicolorGlycine max2016.6785.9464forward
CNT30552636Sorghum bicolorOryza glaberrima29.381796.8194forward
CNT30442397Sorghum bicolorAegilops tauschii58.1318.7790.32186forward
CNT30653155Sorghum bicolorRosa chinensis20.6219.7690.9166forward
CNT30686589Sorghum bicolorTriticum urartu58.1318.9889.78186forward
CNT30595654Sorghum bicolorOryza meridionalis53.4429.2394.74171forward
CNT30369561Sorghum bicolorOryza glumipatula53.4427.9495.32171forward
CNT30100122Sorghum bicolorOryza rufipogon53.4429.9595.32171forward

Expression of CNT30364531

Peptides detected in this lncRNA

>peptide 1 (93 aa)
MQGLGIIHSHIHPSIHRLLGSNKQASTTVNNTARVQASARRATTGYLAWNLVSQSARTPSSLSVSPERSPETSASSLDILPRARLASRPAKTA*

Sequence

>CNT30364531
TCATGGCATGTGGTAGCACTGTATGCAAGGACTAGGAATAATTCACAGCCACATACATCCTTCCATTCACAGATTATTGGGTAGCAACAAACAAGCAAGC
ACAACAGTGAACAACACTGCAAGAGTTCAGGCGTCGGCGAGGCGGGCGACGACGGGGTACTTGGCCTGGAACTTGGTCTCCCAGTCGGCGAGGACGCCGA
GCTCCTTGTCGGTGAGCCCGGAGAGGTCCCCTGAGACGTCGGCCTCGTCCTTGGACATCTTGCCGAGGGCGCGGCTGGCCTCGCGGCCCGCGAAGACGGC
GTAGGAGCCGCCGGGGCCGT