CANTATAdb - search

Detailed information on CNT30364386

BLAST search results

BLAST vs Swiss-Prot:
sp|P69326|UBIQ_WHEAT, E-value = 1e-48

BLAST vs NONCODE:
NONSTUT000620, E-value = 3e-17

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30189410	Sorghum bicolor	Secale cereale	44.78	53.15	92.37	236	forward
CNT30395491	Sorghum bicolor	Triticum turgidum	44.02	47.06	92.24	232	forward
CNT30686462	Sorghum bicolor	Triticum urartu	44.78	12.66	93.64	236	forward
CNT30495775	Sorghum bicolor	Digitaria exilis	49.34	48.87	93.85	260	forward

Expression of CNT30364386

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MPSLSWILALTLSMVSEDSTSRVIVLPVRVFTKICI

>peptide 2 (31 aa)
MLPYKYFRLTNASMTDHTDTSKTGHGRNKRH*

Sequence

>CNT30364386
TGACATAGCAAAAAACAATATTCAACACATATTTTAAATTCCAACATCACATTTATTTAGAATTAAGCCATATGCTGCCGCACTATAGTTTAGGGTAGAA
CACAGAGGAACACAACCGGTCCATGAAACGAACTCAGACACGACACAGACCATACAAATGCTTCCATACAAATACTTCAGACTGACCAACGCTTCAATGA
CGGACCATACAGATACTTCAAAGACTGGACATGGCCGAAACAAGAGGCACTAGACAACCCAGGTGCGGCAGCAGCTTCAACGACTGATGGCTTACTGACC
ACCGCGAAGACGGAGCACCAGGTGGAGGGTGCTCTCTTTCTGGATGTTGTAATCCGCAAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGA
CGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCTATGGTGTCAGAAGACTCCACCTCAAGGGTGATAGTCTTGCCGG
TGAGGGTCTTCACAAAGATCTGCATCT