Detailed information on CNT30364335


BLAST search results

BLAST vs Swiss-Prot:
sp|P10707|CB2D_SOLLC, E-value = 1e-20

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694403Sorghum bicolorOryza sativa11.8120.6487.38103forward
CNT30673696Sorghum bicolorSetaria viridis21.6734.5593.65189forward
CNT30521727Sorghum bicolorSetaria italica20.7628.4693.37181forward
CNT30306537Sorghum bicolorTriticum aestivum10.2125.2194.3889forward
CNT30400439Sorghum bicolorTriticum turgidum9.6331.794.0584forward
CNT30442646Sorghum bicolorAegilops tauschii22.2516.4790.21194forward
CNT30244624Sorghum bicolorAvena sativa20.1872.1385.23176forward
CNT30669298Sorghum bicolorTriticum dicoccoides22.2521.8588.66194forward
CNT30142107Sorghum bicolorLolium perenne19.8420.1483.82173forward
CNT309612Sorghum bicolorZea mays22.2520.6293.3194forward
CNT30344605Sorghum bicolorEragrostis tef8.1432.2792.9671forward
CNT30148497Sorghum bicolorBrachypodium distachyon9.6328.8795.2484forward
CNT30102355Sorghum bicolorOryza rufipogon18.4627.289.44161forward
CNT30576846Sorghum bicolorOryza barthii16.8640.2787.76147forward
CNT30580511Sorghum bicolorEchinochloa crusgalli21.7950.1395.26190forward
CNT30497096Sorghum bicolorDigitaria exilis20.6446.6394.44180forward
CNT30115974Sorghum bicolorOryza nivara6.6526.4894.8358forward

Expression of CNT30364335

Peptides detected in this lncRNA

>peptide 1 (46 aa)
ESESYSKERKRSRRKKRNKKKGLRKAETQILCSYHLSKFSYEFSPF*

>peptide 2 (54 aa)
MVTRPEVVALAQNGRRLDHRDDGARRLGTPTALQLLSPLDDAMAIAGCLPACFR*

>peptide 3 (63 aa)
KVRVTAKSERDLGEKKETKKRVCGKQKHRYFVVIICQSSRMNFLRFKLNFPWLISLEITMGLS*

>peptide 4 (89 aa)
MMMSPMLLCHGSARWVARFSSGPVPGYADCCTQKPTNASMARRPFLISLSLYSSNLAGSLENPSGSKAPPGSRRGGQGGAGRASTRRTW*

Sequence

>CNT30364335
AGAAAGTGAGAGTTACAGCAAAGAGCGAAAGAGATCTAGGAGAAAAAAAAGAAACAAAAAAAAGGGTTTGCGGAAAGCAGAAACACAGATACTTTGTAGT
TATCATTTGTCAAAGTTCTCGTATGAATTTTCTCCGTTTTAAGCTAAACTTCCCCTGGTTAATTAGTCTCGAAATAACCATGGGACTCAGCTAAACCAGT
TTAGATTTGATACAAGACTACAAGAGTAGCCGCTACTTAATAATATAAGCTTTACATTACAAGGGGTTTTCCGGCGCAGGAAGTCGCCGTCGTCGTTGTA
CAGCTCCTGCACGCAGGCAGGCAGCAGGCAATGCCTAGTAATGGCAAGGCAATGACACACGTACAAAACATGCATCTGATCTGAGCTCAAGGGGAGATTG
ATCTGGGGATGATGATGTCGCCGATGTTGTTGTGCCACGGGTCGGCGAGGTGGGTCGCGAGGTTCTCCAGCGGGCCGGTGCCGGGGTACGCCGACTGCTG
CACGCAGAAGCCGACGAACGCGAGCATGGCGAGGCGGCCGTTCTTGATCTCCTTGAGCTTGTACTCCTCGAACTTGGCGGGGTCCTTGGAGAATCCCAGC
GGGTCGAAGGCGCCGCCGGGGAGCCGTCGAGGTGGGCAGGGCGGGGCTGGCCGGGCATCCACTCGGCGGACATGGTGACGCGGCCGGAGGTGGTGGCGTT
GGCGCAGAACGGCAGGCGGCTGGACCACCGGGACGACGGCGCCAGGAGGCTGGGCACGCCCACGGCGCTGCAGCTCCTCAGCCCGCTCGACGACGCCATG
GCCATTGCTGGCTGCCTGCCTGCCTGCTTCCGATGAGAGGAGGGAGAGGAAGCTAGAGAACAAGTGGCGTTT