Detailed information on CNT30364163


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 2e-158

BLAST vs NONCODE:
NONMEST001181, E-value = 2e-105

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691368Sorghum bicolorOryza sativa75.7131.8587.48695forward
CNT30528740Sorghum bicolorEucalyptus grandis72.8879.1787.14669forward
CNT30315749Sorghum bicolorCorylus avellana74.8442.385.88687forward
CNT30513318Sorghum bicolorJuglans regia69.3962.5186.5637forward
CNT30306465Sorghum bicolorTriticum aestivum75.1675.9988.12690forward
CNT30226205Sorghum bicolorHordeum vulgare74.7366.4788.92686forward
CNT30242302Sorghum bicolorAvena sativa75.667.3189.48694forward
CNT30669573Sorghum bicolorTriticum dicoccoides75.670.7488.04694forward
CNT30461176Sorghum bicolorSaccharum spontaneum73.6419.8394.23676forward
CNT307928Sorghum bicolorZea mays73.6456.7191.86676forward
CNT30229606Sorghum bicolorAnanas comosus72.4450.1988.12665forward
CNT30722254Sorghum bicolorTriticum spelta70.1598.3289.91644forward
CNT30370375Sorghum bicolorOryza glumipatula75.7172.8585.61695forward
CNT30576634Sorghum bicolorOryza barthii75.9364.9689.24697forward

Expression of CNT30364163

Peptides detected in this lncRNA

>peptide 1 (58 aa)
MSRCWSGGMPSLSWILALTLSMVSEDSTSRVIVLPVRVLTKICMPPLRRSTKWRVDSF*

>peptide 2 (37 aa)
MPSLSWILALTLSMVSEDSTSRVIVLPVRVFTKICICR

>peptide 3 (50 aa)
MPSLSWILALTLSMVSEDSTSRVIVLPVRVFTKICMPPLRRSTKWRVLSF*

>peptide 4 (31 aa)
MLPYKYFRLTNASMTDHTDTSKTGHGRNKRH*

Sequence

>CNT30364163
ATGCTGCCGCACTATAGTTTAGGGTAGAACACAGAGGAACACAACCGGTCCATGAAACGAACTCAGACACGACACAGACCATACAAATGCTTCCATACAA
ATACTTCAGACTGACCAACGCTTCAATGACGGACCATACAGATACTTCAAAGACTGGACATGGCCGAAACAAGAGGCACTAGACAACCCAGGTGCGGCAG
CAGCTTCAACGACTGATGGCTTACTGACCACCGCGAAGACGGAGCACCAGGTGGAGGGTGCTCTCTTTCTGGATGTTGTAATCCGCAAGGGTGCGGCCAT
CCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCCGAGGA
CTCCACCTCAAGGGTGATCGTCTTGCCAGTAAGGGTCTTCACGAAGATCTGCATGCCTCCCCTAAGGCGCAGCACCAAGTGGAGGGTGCTCTCCTTCTGA
ATGTTGTAATCAGCGAGAGTGCGCCCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGCCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGG
CCTTGACATTGTCGATGGTGTCCGAGGACTCCACCTCAAGGGTGATAGTCTTGCCGGTCAGGGTCTTGACAAAGATCTGCATGCCTCCCCTGAGGCGCAG
CACCAAGTGGAGGGTTGACTCCTTCTGAATGTTGTAGTCGGCAAGCGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAGATAAGCCGCTGCTGGTCAGGA
GGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCTATGGTGTCAGAAGACTCCACCTCAAGGGTGATAGTCTTGCCGGTGAGGGTCTTCACAA
AGATCTGCATCTGCAGAG