Detailed information on CNT30364150


BLAST search results

BLAST vs Swiss-Prot:
sp|P93176|TBB_HORVU, E-value = 3e-77

BLAST vs NONCODE:
NONPOPT001271, E-value = 6e-36

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674787Sorghum bicolorSetaria viridis49.4829.9196.3189forward
CNT30380834Sorghum bicolorManihot esculenta81.417382.96311forward
CNT30388443Sorghum bicolorTriticum turgidum75.9297.6484.83290forward
CNT3062349Sorghum bicolorArabidopsis lyrata28.5312.5182.57109forward
CNT30721065Sorghum bicolorTriticum spelta5085.2790.58191forward
CNT30426941Sorghum bicolorPapaver somniferum28.5318.9284.4109forward
CNT3034106Sorghum bicolorTheobroma cacao45.0384.3179.65172forward
CNT3022287Sorghum bicolorPopulus trichocarpa83.5177.6282.76319forward

Expression of CNT30364150

Peptides detected in this lncRNA

>peptide 1 (30 aa)
WYASSSNTATIRKGTPNPSRTESMSSAPSV*

>peptide 2 (61 aa)
MTLSPVVTSTRLPEHKVVRAEDLPIGSSADTVHCPRLKVHENSTGHKAATGGLIVVDIDTL*

Sequence

>CNT30364150
GGTGGTACGCTAGCAGTAGTAACACGGCAACAATACGAAAGGGGACACCAAACCCATCAAGAACAGAGTCAATGAGCTCAGCACCCTCAGTGTAATGACC
CTTAGCCCAGTTGTTACCAGCACCAGATTGCCCGAACACAAAGTTGTCAGGGCGGAAGATCTGCCCATAGGGTCCAGTGCGGACACTGTCCATTGTCCCA
GGCTCAAGGTCCATGAGAACAGCACGGGGCACAAAGCGGCCACAGGAGGCCTCATTGTAGTAGACATTGACACGCTCTAACTGAAGGTCAGAAGTGCCAG
TGTAGCGGCCAGTAGGGTCAATGCCATGTTCATCACACACCACCTCCCAGAACTTGGCACCGATCTGGTTGCCACATTGGCC