CANTATAdb - search

Detailed information on CNT30364114

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30229782	Sorghum bicolor	Ananas comosus	12.78	37.78	84.71	85	reverse complement

Expression of CNT30364114

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MHEICSVLHAAHLVAQNVISIAGPAHWVQSCILILFVGLKSQVIAKNIVH*

>peptide 2 (31 aa)
MRSAPFFMPLISSRRMSSQLLARPIGFKVVS*

>peptide 3 (40 aa)
HGQHHCGKTVMPKESLPPNHKHQYCKTNSEQNKKVYSVEL*

Sequence

>CNT30364114
CATGGACAACACCATTGTGGGAAGACCGTAATGCCAAAGGAGTCATTGCCCCCAAATCATAAGCACCAATACTGTAAAACCAATTCTGAACAGAATAAAA
AGGTATATTCAGTAGAATTGTAACAATAGAATACGACCCTTCTCAAAATGCATGCATTTTTCTAATATGCTATATGGGGATGGCGAGAAGAGATATTTAC
ATGATTGCATACTAGAGTTACTATAACTAGAGATACTATTGCGTCTCGTACAAAAGTCCCTGTGTATTTATGAAAAAAAATACCCTACCTTTGAGTCCAA
GCTTCATCTTGGATACAACTGATCAAGAGATTTTTATCATTCCTTAAAGATACCAAGAGGTTCAAAAAGAAAAGAAAATTGCTAGAGAATGTACCAAAAG
CAGTAAAGCACCGATTATGCAATTCTTATAGATGCATGAGATCTGCTCCGTTCTTCATGCCGCTCATCTCGTCGCGCAGAATGTCATCTCAATTGCTGGC
CCGGCCCATTGGGTTCAAAGTTGTATCCTAATTCTGTTCGTCGGTCTGAAAAGTCAAGTCATAGCTAAAAATATTGTTCATTGATTTATCGTGAGAGAAA
AACATTGTTGACTGGTAGAAAAAGTACGGCTTATAAGACAAGCGAACGGTTTATAAACACATGTT