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Detailed information on CNT30364089


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677703Sorghum bicolorSetaria viridis73.1392.7491.87332forward
CNT30730558Sorghum bicolorCorchorus capsularis43.8321.2890.95199forward
CNT30505424Sorghum bicolorNicotiana attenuata44.9343.7892.16204forward
CNT30712870Sorghum bicolorGlycine max44.9312.2791.18204forward
CNT3092080Sorghum bicolorSolanum tuberosum39.6530.8793.33180forward
CNT30184864Sorghum bicolorSecale cereale82.664.7791.73375forward
CNT30223648Sorghum bicolorHordeum vulgare82.1615.7189.28373forward
CNT30543279Sorghum bicolorBrassica napus44.9319.2191.67204forward
CNT30438181Sorghum bicolorAegilops tauschii82.642.3791.47375forward
CNT30242955Sorghum bicolorAvena sativa54.4126.4793.12247forward
CNT30667558Sorghum bicolorTriticum dicoccoides82.632.7291.47375forward
CNT30605211Sorghum bicolorGossypium raimondii44.9315.0291.67204forward
CNT30203049Sorghum bicolorHelianthus annuus44.9377.2792.65204forward
CNT30688988Sorghum bicolorTriticum urartu82.619.2991.47375forward
CNT30595740Sorghum bicolorOryza meridionalis26.4346.6995120reverse complement
CNT30357348Sorghum bicolorLactuca sativa44.9324.5591.18204forward
CNT30574572Sorghum bicolorVitis vinifera44.933.0392.65204forward
CNT3056135Sorghum bicolorAmborella trichopoda45.1519.3985.85205reverse complement
CNT30108930Sorghum bicolorOryza longistaminata82.1615.9493.3373forward
CNT3038420Sorghum bicolorCucumis melo44.9314.2991.67204forward
CNT3099908Sorghum bicolorOryza rufipogon48.0279.5693.12218forward
CNT30335929Sorghum bicolorCynara cardunculus21.1526.0289.5896forward
CNT30725732Sorghum bicolorLupinus angustifolius44.9345.2390.69204forward

Expression of CNT30364089

Peptides detected in this lncRNA

>peptide 1 (61 aa)
EGREVESVAVSNRDCVGVQSNAHVRRCRLRRKDAFRGERPWGERICDPWISDRETVSKLHG*

>peptide 2 (34 aa)
MMEKTASNKHRLYYRRAPYGVVQSQQPFWGASIGN

Sequence

>CNT30364089
GAAGGAAGAGAGGTGGAAAGTGTTGCTGTGTCAAATCGAGATTGTGTGGGTGTTCAGTCTAACGCTCATGTTCGACGCTGTCGATTGAGAAGGAAGGACG
CTTTCAGAGGCGAAAGGCCATGGGGAGAGAGGATCTGTGATCCATGGATCTCCGATCGGGAAACCGTATCCAAGCTCCATGGCTAGTCTGTGCTCTTTGG
AATTTCCAAACTTAGCGATCTGAAACATTTGAGTAGCTAAAGGAAGGAAAATCAACCGAGACCTTGTTAGTAGTGGCGAGCAAGAGCTGTACAAGGGTTT
TCATCAAAAGAAATCCGAAACGGTTTCATTTGATTTGTTGTGGATTGGATGATGGAAAAAACAGCAAGCAACAAGCATAGGCTGTATTACCGTAGGGCGC
CCTACGGAGTTGTACAAAGTCAGCAACCATTTTGGGGCGCAAGCATAGGCAACA