Detailed information on CNT3036408


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONCQUT004405, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678839Cucumis meloSetaria viridis84.365.0496.18891forward
CNT30519050Cucumis meloJuglans regia10093.9698.491057forward
CNT30373968Cucumis meloArabidopsis thaliana66.2345.3497.14700forward
CNT30619379Cucumis meloSesamum indicum73.7910097.44780forward
CNT30200729Cucumis meloPisum sativum10043.4698.011057forward
CNT3048154Cucumis meloPrunus dulcis98.4999.2498.171041forward
CNT30285964Cucumis meloTriticum aestivum76.7369.4996.92811forward
CNT30224448Cucumis meloHordeum vulgare74.93100.1394.7792forward
CNT30544510Cucumis meloBrassica napus10066.0697.261057forward
CNT30239033Cucumis meloBrassica oleracea10077.8497.161057forward
CNT30444212Cucumis meloAegilops tauschii84.8668.9596.32897forward
CNT30261854Cucumis meloBrassica rapa82.9782.2797.49877forward
CNT3010382Cucumis meloZea mays89.88101.7193.47950reverse complement
CNT30206557Cucumis meloHelianthus annuus77.237.8398.04816forward
CNT30365254Cucumis meloSorghum bicolor84.4898.6794.74893forward
CNT30413997Cucumis meloPapaver somniferum7910096.65835forward

Expression of CNT3036408

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MMRRRHDGRAIRRVIMNHQSNGQSPRRPFI*

>peptide 2 (44 aa)
MHPFQKSGFVARISSRITTVIRVANTIKQTITDLMSHSQFHSLN*

>peptide 3 (43 aa)
MIRFSGLLATSRAANRPRRRDPNTSPDHSIGRSDGRCVQRAGT*

>peptide 4 (46 aa)
AGSPTETLLRLLLPLNDKVQWTSRDVAGSEPPTSPRSEHFTGPFNR*

>peptide 5 (44 aa)
MKFQRLPGPVGQGYRLVEYISVARVRPRTSKGITDLLLPQTSLA*

Sequence

>CNT3036408
CGCAGGTTCACCTACGGAAACCTTGCTACGACTTCTCCTTCCTCTAAATGATAAGGTTCAGTGGACTTCTCGCGACGTCGCGGGCAGCGAACCGCCCACG
TCGCCGCGATCCGAACACTTCACCGGACCATTCAATCGGTAGGAGCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGTCAACGCGAGCTGATGACTCG
CGCTTACTAGGAATTCCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTACCCGGGCCTGTCGGCCAAGGCTAT
AGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCTTGGCCTAAGCGGCCA
TAGTCCCTCTAAGAAGCTGGCCGCGGAGGGGTACCTCCGCATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAATTAACCAGACAAATCGCTCC
ACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTCTCAGTCTGTCAATCCTTACTATGTCTGGACCTGGTAAGTTTCCCCGTGT
TGAGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTCACCCGTC
ACCACCATAGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGATGCGTCGCCGGCACGATGGCCGTGCGATCCGTCGAGTTATC
ATGAATCATCAGAGCAACGGGCAGAGCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACGTATTAGCTCTAGAA
TTACTACGGTTATCCGAGTAGCAAATACCATCAAACAAACTATAACTGATTTAATGAGCCATTCGCAGTTTCACAGTCTGAATTAGTTCATACTTACACA
TGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAGGATCAACCAGGTAGC