CANTATAdb - search

Detailed information on CNT3036406

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT3020362	Cucumis melo	Citrullus lanatus	30.3	6.95	88.64	220	forward

Expression of CNT3036406

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MREHSYFASDEIEIYELYSISLRVKIRTGSR*

>peptide 2 (49 aa)
MSSVFGIFLLLQTNYNFDFLTVCDCCKHSDDDLNVSDQLMTGISTSYSY*

Sequence

>CNT3036406
ACAAGTAAGGGTAAAATCGTCAATGGTCAACGGAGATGAAACCCTAAAATGACGTGCCGAATCTCCTTTAAATAGTACACAGCATATTGATTCGTTAATT
CATTTTATTCATCGTTTTCGTTCTTTAGGGCACAGATTTGCCTTCTTCCACGGCGAAAGCTTCGTGTTCGTATCTCTTTCTCGTGGCTTCTTCTTCTTCA
TGTACTGTGTTTCTTTTGTTTTAGTTTGTGCTTGATTATGAACCATATGACGAATCTGGATTCAAATTCTCACGACGGTCGTCTGAGACGCATTACGTGT
CGCAACTGATGCAATGATCCATTTTTTCTGATGGTCTACGACGATGTCTTCTGTTTTTGGAATTTTTCTTCTCTTACAAACGAATTACAATTTCGATTTT
CTTACGGTTTGTGATTGTTGCAAGCATAGTGATGATGATTTAAACGTGTCCGATCAACTTATGACTGGAATATCAACCTCCTACTCATACTGAATGCTTG
CTTTGTTTTTCTTAAACCATTTCTTCATAGTTCTTTTTTCGCCTTTCAAAATTTTGGTTTTTCTTTTGGCTATTTAGATTGATCTCTGGTTTCGCTTGCG
ATGGCACCATGAGGGAACACTCGTATTTTGCATCAGATGAAATTGAAATATATGAATTGTACAGCATCTCTCTGAGAGTCAAAATCCGAACCGGCAGCAG
ATAGTAGGTCACCGTGGAGGTGTAAG