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Detailed information on CNT30364010


BLAST search results

BLAST vs Swiss-Prot:
sp|P85955|DRE1_PSEMZ, E-value = 3e-07

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522945Sorghum bicolorSetaria italica45.5852.4590.66289forward
CNT30552163Sorghum bicolorOryza glaberrima25.7120.1287.12163forward
CNT30457661Sorghum bicolorSaccharum spontaneum48.927.8595.48310forward

Expression of CNT30364010

Peptides detected in this lncRNA

>peptide 1 (38 aa)
HEQIELPGEKTQDHPPSKHTPEAPIYQTNNPNILRHTP*

>peptide 2 (79 aa)
MPRPRSQPGISGKTSLMSSRSRSISSSSSPKSPSRRKRKRAQPARGGAASRRRSSGRRKGRQRRPHRRCRRCQATASCR*

>peptide 3 (33 aa)
TSRLNCPGKKPKIIPLPSTLPRPRFIKPTTLTY*

>peptide 4 (34 aa)
MYASKEKSLVLVAGPVVGAPAASSSSSESESVASG

Sequence

>CNT30364010
CACGAGCAGATTGAATTGCCCGGGGAAAAAACCCAAGATCATCCCCCTTCCAAGCACACTCCCGAGGCCCCGATTTATCAAACCAACAACCCTAACATAT
TAAGGCACACTCCTTAATTCACACGCAGAAATCGACGGTTTGCAGGAAGTCGTCCATGCCGCGGCCCAGGTCGCAGCCAGGCATCTCCGGGAAGACGTCG
TTGATGTCGTCGAGGTCGAGGTCAATCTCCAGCTCCTCATCCCCGAAGTCCCCAAGCAGGAGGAAGCGGAAGCGGGCACAGCCTGCCCGCGGCGGCGCCG
CTTCTCGTCGGCGAAGCTCCGGGAGGCGGAAAGGTAGGCAGCGGAGGCCGCACCGGCGGTGTCGAAGGTGCCAAGCCACTGCCTCTTGCCGGTGAACGGG
TTGCGGATCTCCGCCGCCCACTTGCCCCACTTGCGGAGCCTCACGCCGCGGTAGCTCTCCGGCGCCCCGCCGCTGGTGCACGCGGCGACAGTAGCCGCCG
GAAGGACCGGCTTGGCTGGGGCCTTGCCGATGTACGCCTCAAAAGAGAAGAGCTTGGTCCTTGTTGCAGGGCCCGTAGTAGGGGCGCCGGCAGCCTCCTC
CTCGTCGTCGGAGTCCGAGTCCGTGGCGTCGGGG