Detailed information on CNT30363999


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690805Sorghum bicolorOryza sativa58.2559.583.13166forward
CNT30523098Sorghum bicolorSetaria italica41.7543.7593.28119forward
CNT30454405Sorghum bicolorSaccharum spontaneum85.2684.6795.88243forward
CNT30130961Sorghum bicolorLolium perenne22.4626.4587.564forward
CNT306200Sorghum bicolorZea mays83.8687.8796.23239forward
CNT30100020Sorghum bicolorOryza rufipogon36.8447.0988.57105forward

Expression of CNT30363999

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MGAAWRGRRRRRRLCLRRGRGLGFCGRWRGRWRRSEGATEA*

>peptide 2 (75 aa)
PARDTFSFLKTEVSKSSDGMAVPITDGDETFAATARRRSAEAARRHGGCVAGKETEAAAVPTEGAGFRVLRAMAR*

>peptide 3 (66 aa)
GQGHLLLLEDGGLEVERWHGGADNRRRRDLRSHGAAAVRGGGEEAWGLRGGEGDGGGGCAYGGGGV*

Sequence

>CNT30363999
CCGGCCAGGGACACCTTCTCCTTCTTGAAGACGGAGGTCTCGAAGTCGAGCGATGGCATGGCGGTGCCGATAACCGACGGCGACGAGACCTTCGCAGCCA
CGGCGCGGCGGCGGTCCGCGGAGGCGGCGAGGAGGCATGGGGGCTGCGTGGCGGGGAAGGAGACGGAGGCGGCGGCTGTGCCTACGGAGGGGGCGGGGTT
TAGGGTTTTGCGGGCGATGGCGAGGTAGGTGGAGGAGGAGCGAAGGGGCTACTGAAGCGTGAGGGTGGCTGGCTGGAAAGAGGGG