Detailed information on CNT30363948


BLAST search results

BLAST vs Swiss-Prot:
sp|O04133|SRC2_SOYBN, E-value = 3e-23

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30523112Sorghum bicolorSetaria italica92.1621.0393.62282forward
CNT30247924Sorghum bicolorAvena sativa90.8518.0187.41278forward
CNT30455685Sorghum bicolorSaccharum spontaneum96.4120.2697.97295forward
CNT30135479Sorghum bicolorLolium perenne89.5419.6788.69274forward
CNT30651444Sorghum bicolorRosa chinensis25.828.4389.8779forward
CNT30680887Sorghum bicolorTriticum urartu19.9321.3386.8961forward
CNT30579873Sorghum bicolorEchinochloa crusgalli95.4221.4192.81292forward

Expression of CNT30363948

Peptides detected in this lncRNA

>peptide 1 (82 aa)
WRRARRAGCGPRRRRGRRGRARRGGGRGGNPRRWPGRRSGPWRSRSGCGRRCGRPGPAAVTGGRRRATPRRRPPSWTSGSRP*

>peptide 2 (60 aa)
AGEGLGERDVDLADVAVAEGALGAEEDVEGTRAGGRDGEADRGVPGRVAAADAVGLDPLP*

>peptide 3 (71 aa)
LEKGSESGMWTSPTSRSPRARSARRRTWREPAPVAGTAKRTVAFQVGLRPPMRSAWTRCRDRGSPESDTTA*

Sequence

>CNT30363948
GCTGGAGAAGGGCTCGGAGAGCGGGATGTGGACCTCGCCGACGTCGCGGTCGCCGAGGGCGCGCTCGGCGCGGAGGAGGACGTGGAGGGAACCCGCGCCG
GTGGCCGGGACGGCGAAGCGGACCGTGGCGTTCCAGGTCGGGTTGCGGCCGCCGATGCGGTCGGCCTGGACCCGCTGCCGTGACCGGGGGTCGCCGGAGA
GCGACACCACGGCGTAGACCTCCATCTTGGACATCAGGTTCACGTCCTTGAGGTCCTTGGCGGAGATCAGCGTCAGCTCCAGCGTCCGCGTCGTCGCCAT
GGCCGG