CANTATAdb - search

Detailed information on CNT30363947

BLAST search results

BLAST vs Swiss-Prot:
sp|Q6ZBP3|H2B2_ORYSJ, E-value = 2e-56

BLAST vs NONCODE:
NONORUT000045, E-value = 2e-28

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30163367	Sorghum bicolor	Pistacia vera	33.01	32.53	78.23	271	forward
CNT30565715	Sorghum bicolor	Actinidia chinensis	32.52	34.01	85.39	267	forward
CNT30244799	Sorghum bicolor	Avena sativa	55.91	63.93	89.98	459	forward
CNT30455512	Sorghum bicolor	Saccharum spontaneum	75.76	72.49	93.57	622	forward

Expression of CNT30363947

Peptides detected in this lncRNA

>peptide 1 (38 aa)
GNTLVTVWYIVVHIQLSFHCQQYDSYRVIASHPARNRM*

>peptide 2 (44 aa)
MKIINSNSKSTKSSPQFLPKPNCTQTINPFPAPTSNHYCYHYQY*

>peptide 3 (29 aa)
MSLMKEFMMDMALEEMPMSGCTCLSTLKM*

Sequence

>CNT30363947
GGTAACACACTTGTCACAGTTTGGTATATAGTTGTTCACATACAATTATCATTTCATTGCCAGCAATATGATAGTTACAGGGTAATAGCATCGCATCCTG
CCAGAAATCGAATGTAGAACAACCACCGCGACTAATGAAGATCATAAACAGTAATTCCAAAAGCACCAAAAGTTCACCACAATTCTTACCAAAACCCAAC
TGCACCCAGACCATCAATCCATTCCCAGCTCCAACATCCAACCACTACTGCTACCACTATCAGTACTAGATAAACTGGGCGACATCTACCAACGCCACCC
AGTAGCTACTGCCACCAACCTAAGATGAGGTGAACTTGGTAACGGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCGAGCTCGCCTGGGAGGACGAGGCG
CACCGACGTCTGGATCTCCCTGGAGGTGATGGTGGGCTTCTTGTTGTAGCGGGCGAGCTTGGCGGCCTCGCCGGCGAGCTTCTCGAAGATGTCGTTGATG
AAGGAGTTCATGATGGACATGGCCTTGGAGGAGATGCCGATGTCGGGGTGCACCTGCTTGAGCACCTTGAAGATGTAGATCTTGTAGGTCTCCACCGACT
TCTTGGCCTTCTTCTTGCCCTTCTTGTCGCCGCCCTCCTTGCCGGCAGACTTGCCCGCGGGGAGGCGCTTCTCCGCCTTGGGCTTCTTCCCCGCCGGGGC
CTTCTCGGCCGCGGGCTCCTCCTCCGCGGGCTTCTTCGCCGCCGGCTTCTTCTCCGCCTTGGGCGCCATCGATGCTGTGGGGGTGAGGCTGCGGGGACGG
AGGGATTCGCTAGCTAGGTCG