Detailed information on CNT30363927


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT000009, E-value = 1e-89

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30524664Sorghum bicolorSetaria italica88.8326.1599.16358forward
CNT30500477Sorghum bicolorCoffea canephora88.8319.6694.13358forward
CNT30202038Sorghum bicolorPisum sativum88.8331.4692.46358reverse complement
CNT3088853Sorghum bicolorVigna radiata31.0230.8696.8125reverse complement
CNT30510842Sorghum bicolorSolanum lycopersicum34.2425.3795.65138forward
CNT30554621Sorghum bicolorOryza glaberrima50.3794.4299.51203forward
CNT3062651Sorghum bicolorArabidopsis lyrata67.9932.9395.62274reverse complement
CNT3068134Sorghum bicolorLeersia perrieri57.0763.5493.04230reverse complement
CNT30126841Sorghum bicolorCorymbia citriodora55.8360.4893.78225forward
CNT30720907Sorghum bicolorTriticum spelta88.8335.0699.16358reverse complement
CNT30370808Sorghum bicolorOryza glumipatula50.3793.55100203forward
CNT30646295Sorghum bicolorCannabis sativa86.8540.7589.14350forward
CNT30574740Sorghum bicolorOryza barthii71.2258.3398.26287forward

Expression of CNT30363927

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MSKCIGRGAFRLRGKQTRKRGSTKRKRECRLE*

>peptide 2 (72 aa)
MNGAKRSAEAVGCQNASVGERSALEGSKRESGGRQSGSENVGLSNKNIGENPMPRKPKVSSARFVHGGDGGG*

Sequence

>CNT30363927
GAATCCGGTTTATATATGAGATAGGGAAACAGCCCGGATCACCAGCTAAGGCCCCTAAATGACCGCTCAGTGATAAAGGAGGTGGGGGTGCAAAGACAGC
CAGGAGGTTTGCCTAGAAGCAGCCACCCTTTAAAGAGTGCGTAATAGCTCACTGATCGAGCGCCCTTGCGCTGAAGATGAACGGGGCTAAGCGATCTGCC
GAAGCTGTGGGATGTCAAAATGCATCGGTAGGGGAGCGTTCCGCCTTAGAGGGAAGCAAACGCGAAAGCGGGGGTCGACAAAGCGGAAGCGAGAATGTCG
GCTTGAGTAACAAAAACATTGGTGAGAATCCAATGCCCCGAAAACCCAAGGTTTCCTCCGCAAGGTTCGTCCACGGAGGGGACGGAGGAGGCTAGGTTAG
CCG