CANTATAdb - search

Detailed information on CNT30363915

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30674367	Sorghum bicolor	Setaria viridis	12.96	23.45	92.16	102	forward
CNT30456759	Sorghum bicolor	Saccharum spontaneum	38.37	64.53	94.37	302	forward
CNT304942	Sorghum bicolor	Zea mays	14.23	31.64	93.75	112	forward
CNT30604008	Sorghum bicolor	Oryza punctata	12.83	29.53	88.12	101	forward

Expression of CNT30363915

Peptides detected in this lncRNA

>peptide 1 (85 aa)
MKGGIGVTGAGSVKLEWRQLEVSIGDWRAARRRIGCAVAGWVARRPRRRESNLWPRRAEAREPRSQRACGSCPATSVRLETQALGE

>peptide 2 (50 aa)
MMNLPLPGLMAATKKKRTLKMTSGSISLMGIRSSHVLARAEDRSCVLVVV*

>peptide 3 (46 aa)
MGCQEATSPRIQSMAAPRRGQGAQEPACVRLLSCDLRTAGDAGIGGG

Sequence

>CNT30363915
TACGGGATTCGTCCATGTTTTTTTTTTTTGACGGGATTCGTCCATGTTTGACAGGTGTACGGTCATGCATTTGAAGCTACAATACGAGTAAGCTCTTGTT
TCTACAAGACAACTCAACACGACACCCTACCTTTCGAGGTCTCATCACGCTTACTAATACACAACAAAGCACGTACGCACACGCACTGCGAGACGCACTG
ATCGATCAACACAGCACAGGTAACCCAAGCGCACAGTACTACTCATCACTCATCAGGTTCGAGGACAGCAGCATCAGCCTACTCTTCGTCCTCGCCGATG
ATGAACCTGCCGTTGCCAGGGTTGATGGCGGCGACGAAGAAGAAGAGGACGTTGAAGATGACGAGCGGCTCGATCTCGTTGATGGGAATTCGCAGCAGCC
ACGTACTCGCGCGCGCTGAGGATCGAAGCTGTGTACTCGTAGTCGTATAGGCGAGCGCGCGCGGCTGCGAGCTGCGTGGTCGTGGGCTCCCGTGTCTACT
GGCTCCGAGGCCGCGTGTCCCGTTCTTATGAAAGGGGGCATTGGGGTCACAGGCGCGGGCAGCGTGAAGCTGGAGTGGCGCCAACTGGAGGTGTCGATTG
GCGACTGGCGAGCGGCGAGGCGGAGGATAGGGTGCGCCGTTGCGGGATGGGTTGCCAGGAGGCCACGTCGCCGAGAATCCAATCTATGGCCGCGCCGCGC
CGAGGCCAGGGAGCCCAGGAGCCAGCGTGCGTGCGGCTCCTGTCCTGCGACCTCCGTACGGCTGGAGACGCAGGCATTGGGGGAGGG