Detailed information on CNT30363889


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT003678, E-value = 2e-113

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30223394Sorghum bicolorHordeum vulgare48.619.5194.22225reverse complement
CNT30555551Sorghum bicolorOryza glaberrima36.516.2296.45169forward
CNT30721163Sorghum bicolorTriticum spelta52.2723.4794.21242reverse complement

Expression of CNT30363889

Peptides detected in this lncRNA

>peptide 1 (56 aa)
SKKTAARYCTNARRSKSMHVYGSATTFALIPCFKIKGFSPLFAGRQRRELRLWKHQ*

>peptide 2 (99 aa)
ARKQLRVIVLTRDGARVCTCTGAQRLSHSSLASKLKDLALCLLVAKDESFAFGSTSSIGRPGQPRLSELVDGFDDSTVNIKERRVRGRGGSPRPDHPRL*

Sequence

>CNT30363889
CAGCAAGAAAACAGCTGCGCGTTATTGTACTAACGCGCGACGGAGCAAGAGTATGCACGTGTACGGGAGCGCAACGACTTTCGCACTCATCCCTTGCTTC
AAAATTAAAGGATTTAGCCCTCTGTTTGCTGGTCGCCAAAGACGAGAGCTTCGCCTTTGGAAGCACCAGTAGCATAGGGCGACCGGGCCAGCCGAGACTC
TCTGAATTAGTTGACGGCTTTGATGACTCGACGGTGAATATTAAGGAAAGGAGAGTGAGGGGAAGAGGGGGCAGCCCTCGGCCCGATCATCCTAGGCTAT
AAGGCATGTTAGATGGACTGATTGGGCACCCCTGCAGCATGCACGGCATGCGTGCTTCTATGTTCATTGCATTGCCTGATTGATTTGCTCCCTACTGCAA
CAACTAGGCTGATTAGGAAGTTTGTATTCTATGTAATTCTATGTATATCACATTAGATTGTTG