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Detailed information on CNT30363833

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30522654	Sorghum bicolor	Setaria italica	24.01	58.89	99.06	212	forward
CNT30524694	Sorghum bicolor	Phaseolus vulgaris	19.25	60.5	80.59	170	forward
CNT30620290	Sorghum bicolor	Cajanus cajan	7.36	21.74	89.23	65	forward
CNT30360397	Sorghum bicolor	Lactuca sativa	14.5	30.99	81.25	128	forward
CNT3099936	Sorghum bicolor	Oryza rufipogon	32.39	56.97	94.41	286	forward
CNT30574872	Sorghum bicolor	Oryza barthii	32.39	47.59	94.76	286	forward
CNT30497686	Sorghum bicolor	Digitaria exilis	22.08	54.78	99.49	195	forward
CNT30557967	Sorghum bicolor	Panicum hallii	34.54	60.88	97.05	305	forward

Expression of CNT30363833

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MGGMRRNPENSAVQERSRNSTKIWRSGPSILSAAALNSGLRTKWVWL*

>peptide 2 (42 aa)
MLLLLMQFTVTYMEMPHNKNLPSFMLPKSQYFTDEHKKMQIL*

Sequence

>CNT30363833
TAGTGTTACACAATCAACCAAATGTGCTTGATACATTCATCATGCTAGTTCGACGTTCCATGGTTAAGTAACTGCTCTGAGGCCATATGTGATTGATCAT
ATAAAGGTCTGAATGCTTTTGCTTCATTAGCAGTACAACAACTTCGGACGTTCCCTTCTGTTGGAAAACTGGAACGGTCGCTTCTGATGCTATTGCTTCT
GATGCAGTTCACTGTCACTTACATGGAGATGCCACACAACAAAAACTTGCCAAGCTTTATGTTGCCAAAGTCTCAGTATTTTACAGACGAACACAAGAAG
ATGCAGATCCTCTAACCGTCCAGCGTTTTCACCATTCAGGCCCCTTAGGGGAAAGCACCAACTTCAAAATCAACTGAGCCAGACTCGATGGGGGGCATGA
GGAGGAATCCGGAGAACTCGGCGGTGCAGGAGCGCTCGAGGAACTCGACGAAGATCTGGCGGAGCGGGCCCTCCATCTTGTCGGCGGCGGCCTTGAACTC
GGGGTTGCGCACGAAGTGGGTCTGGTTGTAGTCCGTCTTGAACTCCTGCAGCAGCGCGTCGAACTCCGCCTGGTTGAGCTGCTTGTTGATCTCGGCGTTG
AAGAGGCGCTCCATCTCGTCGAAGTCGGTGGTGTAGAACCGCGGCGTGAGCAGCGTCTCCTGGATCTCCGTCTTGCCCCGCTTCTTGGGGCCCGACGACT
TGGGCGGCGCCGCGGCCGCGGCCGAGGCGGACACGCGGCGGAACCGGACCACGGAGCGCCGCGCGAGGGGCAGGCCCCCAAGGTGGCGGTGCGTCGCGGC
GGGGTTGAGGAGCGAGAGCTCCATGGCGGAGGCGGCCATTGGTGGCGGCGACGGGGTGGACGGACTGGGGGCAGCGGCGGGAG