« Back to Sorghum bicolor search


Detailed information on CNT30363710


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522345Sorghum bicolorSetaria italica33.5626.2786.8197forward
CNT30530404Sorghum bicolorEucalyptus grandis34.7557.4689.22204forward
CNT30316147Sorghum bicolorCorylus avellana37.6529.6685.52221forward
CNT30703138Sorghum bicolorQuercus lobata39.0143.782.1229forward
CNT3068683Sorghum bicolorQuercus suber39.0146.5482.53229forward
CNT30524728Sorghum bicolorPhaseolus vulgaris19.2520.9382.3113forward
CNT30182233Sorghum bicolorSecale cereale38.8436.6687.72228forward
CNT30289293Sorghum bicolorTriticum aestivum21.8142.1187.5128forward
CNT30222279Sorghum bicolorHordeum vulgare25.8950.3387.5152forward
CNT30590847Sorghum bicolorMusa acuminata22.3228.6782.44131forward
CNT30539234Sorghum bicolorBrassica napus38.1624.4881.25224forward
CNT30244810Sorghum bicolorAvena sativa33.0524.0186.08194forward
CNT30261302Sorghum bicolorBrassica rapa38.1643.3381.25224forward
CNT30454417Sorghum bicolorSaccharum spontaneum38.8429.1298.25228forward
CNT30134072Sorghum bicolorLolium perenne38.8431.486.84228forward
CNT3066796Sorghum bicolorLeersia perrieri38.8458.6187.28228forward
CNT30653881Sorghum bicolorRosa chinensis35.619.5780.86209forward
CNT30713695Sorghum bicolorMalus domestica golden27.0935.2582.39159forward
CNT30339698Sorghum bicolorEragrostis tef35.616.9287.56209forward
CNT30595456Sorghum bicolorOryza meridionalis39.0140.1887.77229forward
CNT30105598Sorghum bicolorOryza longistaminata39.0133.2493.45229forward
CNT30319856Sorghum bicolorAsparagus officinalis30.1563.2181.92177forward
CNT30102778Sorghum bicolorOryza rufipogon9.3721.7494.5555forward
CNT30574680Sorghum bicolorOryza barthii39.8625.5592.74234forward
CNT30580197Sorghum bicolorEchinochloa crusgalli38.8427.6796.05228forward
CNT30497454Sorghum bicolorDigitaria exilis38.8461.2985.09228forward
CNT30115589Sorghum bicolorOryza nivara39.8616.492.74234forward
CNT30594668Sorghum bicolorEragrostis curvula25.8945.187.5152forward
CNT30603529Sorghum bicolorOryza punctata39.8630.5994.44234forward
CNT30550386Sorghum bicolorOryza brachyantha30.4965.0993.85179forward
CNT3064271Sorghum bicolorSelaginella moellendorffii38.3340.9179.11225forward

Expression of CNT30363710

Peptides detected in this lncRNA

>peptide 1 (97 aa)
MVRHVALAPREEVVHHDHAVAALHQPVHQVVESDRRGGLGRRRGGGGGESEEGGSEEHAGEGEDRAVLGGGVARGAGEPGERLGGLRGVLSAVGGGAW

>peptide 2 (88 aa)
MGSTTSWRITSNLGFWRWCATLPLRPVKKLSTTITLSPRSTSRSTRWLNPTDAAGSDGDEVEGEEKVKRAAAKSMPARAKTGRCSAAA*

>peptide 3 (37 aa)
HQEQTKLNHKQRVQQNNLARIESQPSIIIKIITIKRK*

Sequence

>CNT30363710
CATCAGGAACAAACAAAATTAAACCATAAACAAAGGGTACAACAAAACAACTTAGCAAGAATTGAGTCACAACCATCAATCATCATTAAAATAATAACAA
TAAAACGAAAGTAAATTTGGATTAGCATTCAGATTCAGATGAAGCAACTGAGTGAGGATATGATGGTCTTGATGGGGTTGTACTTGTAGTGCACGGGGCT
GGCTGGGCAGGCAAGGTGGTAGATCTGGTCGACCTCGAGCAGTATGGGCTCGACGACGTCGTGGCGGATCACCTCGAACCTGGGGTTCTGGAGATGGTGC
GCCACGTTGCCCTTGCGCCCCGTGAAGAAGTTGTCCACCACGATCACGCTGTCGCCGCGCTCCACCAGCCGGTCCACCAGGTGGTTGAATCCGACCGACG
CGGCGGGCTCGGACGGCGACGAGGTGGAGGGGGAGGAGAAAGTGAAGAGGGCGGCAGCGAAGAGCATGCCGGCGAGGGCGAAGACCGGGCGGTGCTCGGC
GGCGGCGTAGCGCGCGGCGCGGGAGAGCCAGGAGAGCGGCTTGGAGGGCTTCGGGGAGTACTCTCCGCCGTTGGAGGCGGAGCCTGG