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Detailed information on CNT30363663


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 8e-124

BLAST vs NONCODE:
NONMEST001181, E-value = 2e-105

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30395844Sorghum bicolorTriticum turgidum59.8429.8690.26462forward

Expression of CNT30363663

Peptides detected in this lncRNA

>peptide 1 (73 aa)
MAETTGTKTTQVHSSSFDDQWLTAHHGDGAPGEGWIPSGYCSRRGCAHPPAACRQRSNAAGLGECPPCPGSWP*

>peptide 2 (96 aa)
MEGALLLDVVVSKRATVLKLLASKDEPLLVWRDALLVLNLSLDVVDGVRRLHLKGDGLASQGLDKDLHASPEAENQVEGALLLDIVVSKRAPVLKLL

>peptide 3 (53 aa)
MPSLSWILALTLSMVSEDSTSSVMVLPVRVFTKICMPPLRRSTRWRVLSFWML*

>peptide 4 (40 aa)
MVSEDSTSRVMVLPVKVLTKICMPPLRRRTKWRVLSFWIL*

Sequence

>CNT30363663
GCACCATGCACGCAGATTTTTAAAGTTCAAACACCACTTATTTGATAAAGCATACTGCTGCACCAACTGTTCCTGGTAAAATACTTGGGACACAACCCGT
CCACGAAACTAAACTGAATTACAAGAGAAACCACAGATACTTAAAAGAGGACACCCTCCATGGCAGAGACCACAGGCACAAAGACAACGCAGGTACACAG
CAGCAGCTTCGACGACCAATGGCTTACTGCCCACCACGGAGACGGAGCACCAGGTGAAGGGTGGATTCCTTCTGGATATTGTAGTCGGCGAGGGTGCGCC
CATCCTCCAGCTGCTTGCCGGCAAAGATCAAACGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCAATGGTGTCTGA
GGACTCCACCTCAAGTGTGATGGTCTTGCCGGTGAGGGTCTTCACAAAAATCTGCATGCCTCCCCTCAGGCGGAGCACCAGATGGAGGGTGCTCTCCTTC
TGGATGTTGTAGTCAGCAAGCGTGCGACCGTCCTCAAGCTGCTTGCCAGCAAAGATGAGCCGCTGCTGGTCTGGAGGGATGCCCTCCTTGTCCTGAATCT
TAGCCTTGACGTTGTCGATGGTGTCAGAAGACTCCACCTCAAGGGTGATGGTCTTGCCAGTCAAGGTCTTGACAAAGATCTGCATGCCTCCCCTGAGGCG
GAGAACCAAGTGGAGGGTGCTCTCCTTCTGGATATTGTAGTCAGCAAGCGTGCGCCCGTCCTCAAGCTGCTT