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Detailed information on CNT30363528


BLAST search results

BLAST vs Swiss-Prot:
sp|Q5EFU4|CRD1_HORVU, E-value = 1e-22

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675451Sorghum bicolorSetaria viridis11.230.4993.69111forward
CNT30523074Sorghum bicolorSetaria italica13.9346.31100138forward
CNT30454508Sorghum bicolorSaccharum spontaneum53.7872.5294.37533forward
CNT30342210Sorghum bicolorEragrostis tef28.1538.5986.74279forward

Expression of CNT30363528

Peptides detected in this lncRNA

>peptide 1 (39 aa)
ICKFTWYSLQTLLNGFLVLHNQPNVLDTFIMLVRRSMVK*

>peptide 2 (42 aa)
MLLLLMQFTVTYMEMPHNKNLPSFMLPKSQYFTDEHKKMQIL*

Sequence

>CNT30363528
ATATGTAAATTCACATGGTACAGCCTCCAAACGCTGTTAAATGGTTTTCTAGTGTTACACAATCAACCAAATGTGCTTGATACATTCATCATGCTAGTTC
GACGTTCCATGGTTAAGTAACTGCTCTGAGGCCATATGTGATTGATCATATAAAGGTCTGAATGCTTTTGCTTCATTAGCAGTACAACAACTTCGGACGT
TCCCTTCTGTTGGAAAACTGGAACGGTCGCTTCTGATGCTATTGCTTCTGATGCAGTTCACTGTCACTTACATGGAGATGCCACACAACAAAAACTTGCC
AAGCTTTATGTTGCCAAAGTCTCAGTATTTTACAGACGAACACAAGAAGATGCAGATCCTCTAACCGTCCAGCGTTTTCACCATTCAGGCCCCTTAGGGG
AAAGCACCAACTTGTCTTTCGGGAATAATTCGGAGAGAAATCTTTCTACAGAATCAGTAAACAAGCTGGGGCTCAAATTCAGCAAAATCAACTGAGCCAG
ACTCGATGGGGGGCATGAGGAACTGCGGCTGAGCCTTGAGCAGGGCAGAGAAGAAGTCACCGTGCCTGTTCTCGTCCTGGCACCAGTTTTCGAAGTACTT
GAAGATAGGGTACACCTGATACTCTGGGTTCGCTTTGAGTCCGTCTTGAACTCCTGCAGCAGCGCGTCGAACTCCGCCTGGTTGAGCTGCTTGTTGATCT
CGGCGTTGAAGAGGCGCTCCATCTCGTCGAAGTCGGTGGTGTAGAACCGCGGCGTGAGCAGCGTCTCCTGGATCTCCGTCTTGCCCCGCTTCTTGGGGCC
CGACGACTTGGGCGGCGCCGCGGCCGCGGCCGAGGCGGACACGCGGCGGAACCGGACCACGGAGCGCCGCGCGAGGGGCAGGCCCCCAAGGTGGCGGTGC
GTCGCGGCGGGGTTGAGGAGCGAGAGCTCCATGGCGGAGGCGGCCATTGGTGGCGGCGACGGGGTGGACGGACTGGGGGCAGCGGCGGGAG