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Detailed information on CNT30363315

BLAST search results

BLAST vs Swiss-Prot:
sp|P31156|METK2_PETCR, E-value = 1e-58

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30674842	Sorghum bicolor	Setaria viridis	27.95	39.86	94.83	232	forward
CNT30522677	Sorghum bicolor	Setaria italica	63.25	59.19	95.05	525	forward
CNT30190429	Sorghum bicolor	Secale cereale	27.83	48.63	89.18	231	forward
CNT30303722	Sorghum bicolor	Triticum aestivum	37.47	51.32	88.75	311	forward
CNT30225924	Sorghum bicolor	Hordeum vulgare	40.96	60.39	87.35	340	forward
CNT30441436	Sorghum bicolor	Aegilops tauschii	29.16	47.73	88.02	242	forward
CNT30667060	Sorghum bicolor	Triticum dicoccoides	41.57	54.33	88.7	345	forward
CNT3014405	Sorghum bicolor	Zea mays	27.47	42.22	96.05	228	forward
CNT30686069	Sorghum bicolor	Triticum urartu	37.23	36.31	89.32	309	forward
CNT30344080	Sorghum bicolor	Eragrostis tef	12.65	36.46	90.48	105	reverse complement
CNT3055147	Sorghum bicolor	Amborella trichopoda	34.94	29.96	83.45	290	forward
CNT30574675	Sorghum bicolor	Oryza barthii	21.57	39.69	91.62	179	forward

Expression of CNT30363315

Peptides detected in this lncRNA

>peptide 1 (62 aa)
MLVLVQVSHATLLSGSCARQASSTASDTWSHSLSGCPSFTDSEVKRKLSAAIAFFFSGDKLTS

>peptide 2 (54 aa)
MNLLPPFFRSRLMVIMPGLKSKFSLTILRISLSGMLPVPYESTNTDRGSGTPMA*

Sequence

>CNT30363315
GGACGGAGAAATGTGAACTTGTAATTGCGCTTGGTTACACAGGGGGCACCTAAAGGGTAACAGTAACATACGAATATTGATAGATTAAAAACTGCAAATC
TCTCAGCAGTTTCAGTACAGACTCGAAAAGGGGAAGAAAAAAAAATACTGGACGACCAAACTAAAAGATAAAGATCAGCGCATAATCCTGGTTGCTGCCA
CACCAAATTATACCAATCCCTAAGCCGGCGGCGGTCTTGATGAACCTGTTGCCGCCTTTCTTCAGGTCGAGGTTGATGGTGATCATGCCGGGCCTGAAGT
CGAAGTTCTCCTTGACGATCTTGAGGATCTCCTTGTCCGGGATGCTCCCGGTGCCGTACGAGTCGACGAACACGGACAGGGGCTCCGGCACGCCGATGGC
GTAGGAGACCTGCACGAGGCAGCGGCGGGCGAGGCCGCTGGCCACGATGCTCTTGGCGGCCTGCCTGGCGATGTAGGCGCCGCTGCGGTCCACCTTGGTG
GGGTCCTTGCCGGAGAAGGCGCCACCGCCGTGGGCACCCCAGCCGCCGTAGGTGTCGATGATGATCTTGCGGCCGGTGTCCCGGACGATCTTCTCGTAGT
CCACGGTGGCCTTGGTGGTGATCTCGCCGAACACCATCACCATGTTGGTCTTGGTGCAGGTCTCGCACGCCACCTTGCTGTCGGGGTCCTGCGCGAGGCA
GGCGTCGAGCACGGCGTCCGACACCTGGTCGCACAGCTTGTCGGGGTGCCCCTCGTTCACGGACTCCGAGGTGAAGAGGAAGCTCTCAGCCGCCATTGCT
TTCTTCTTCTCGGGCGATAAATTAACCTCT