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Detailed information on CNT30363261

BLAST search results

BLAST vs Swiss-Prot:
sp|Q37069|YCX1_MAIZE, E-value = 1e-07

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30675387	Sorghum bicolor	Setaria viridis	22.39	70.2	95.79	285	forward
CNT30524663	Sorghum bicolor	Setaria italica	33.31	72.85	99.76	424	forward
CNT30641615	Sorghum bicolor	Nymphaea colorata	33.31	76.53	89.86	424	forward
CNT30549212	Sorghum bicolor	Ipomoea triloba	34.41	14.52	88.81	438	forward
CNT30270599	Sorghum bicolor	Chenopodium quinoa	27.02	21.13	88.08	344	forward
CNT30730494	Sorghum bicolor	Corchorus capsularis	34.09	49.32	89.17	434	forward
CNT30290333	Sorghum bicolor	Triticum aestivum	24.43	82.06	95.82	311	forward
CNT30220801	Sorghum bicolor	Hordeum vulgare	28.2	92.53	99.16	359	forward
CNT30396824	Sorghum bicolor	Triticum turgidum	31.58	39.92	98.26	402	reverse complement
CNT30569398	Sorghum bicolor	Actinidia chinensis	51.37	33.47	86.39	654	forward
CNT30511569	Sorghum bicolor	Solanum lycopersicum	13.9	71.95	89.83	177	reverse complement
CNT30552690	Sorghum bicolor	Oryza glaberrima	33.31	27.69	98.35	424	forward
CNT30442196	Sorghum bicolor	Aegilops tauschii	28.83	43.28	99.18	367	reverse complement
CNT30660220	Sorghum bicolor	Triticum dicoccoides	21.92	82.3	98.57	279	reverse complement
CNT30460907	Sorghum bicolor	Saccharum spontaneum	33.31	12.73	99.76	424	forward
CNT3017993	Sorghum bicolor	Zea mays	33.31	22.53	99.76	424	forward
CNT30215429	Sorghum bicolor	Helianthus annuus	27.26	49.29	91.07	347	forward
CNT30689042	Sorghum bicolor	Triticum urartu	33.31	14.71	99.06	424	forward
CNT30720843	Sorghum bicolor	Triticum spelta	16.89	100	99.07	215	forward
CNT30347837	Sorghum bicolor	Eragrostis tef	33.31	54.99	98.11	424	reverse complement
CNT30620564	Sorghum bicolor	Cajanus cajan	34.17	8.41	88.74	435	reverse complement
CNT30596724	Sorghum bicolor	Oryza meridionalis	59.62	31.38	97.36	759	reverse complement
CNT30410880	Sorghum bicolor	Papaver somniferum	34.09	47.9	90.32	434	forward
CNT30642274	Sorghum bicolor	Cannabis sativa	31.03	48.35	83.8	395	reverse complement
CNT3036965	Sorghum bicolor	Cucumis melo	34.09	59.62	89.86	434	forward
CNT30331560	Sorghum bicolor	Dioscorea rotundata	13.83	34.85	95.45	176	forward
CNT30148090	Sorghum bicolor	Brachypodium distachyon	33.31	14.6	99.06	424	reverse complement
CNT30104374	Sorghum bicolor	Oryza rufipogon	33.31	31.93	97.88	424	reverse complement
CNT30497700	Sorghum bicolor	Digitaria exilis	26.32	61.24	99.4	335	reverse complement
CNT30604015	Sorghum bicolor	Oryza punctata	16.03	42.24	99.51	204	reverse complement
CNT30174498	Sorghum bicolor	Vigna angularis	31.19	78.61	88.41	397	forward
CNT30551087	Sorghum bicolor	Oryza brachyantha	18.38	78.52	99.15	234	reverse complement
CNT30115272	Sorghum bicolor	Eutrema salsugineum	10.76	28.19	89.05	137	forward

Expression of CNT30363261

Peptides detected in this lncRNA

>peptide 1 (59 aa)
MKRKDEKTKKKLCPSISWINREGGQSPLVSLPVKNWGFTITSQYFSHAFSRSWFDILVS*

>peptide 2 (59 aa)
MAEEKKVPFGGYPREEIQWRRGGPVAQRIRARGYEPRCRGFESLLAHSLPKGEGPLLSP*

>peptide 3 (49 aa)
MIKSLTPLILLFHYFEIRKRSKSKTQRSSYSKPQSSPLSHFTPQNALFL*

>peptide 4 (43 aa)
MVRYSGVLGVEEPHQSIPNLVVKLYCGDDTVGEVLRQNSSMPE*

>peptide 5 (36 aa)
MSALSSDFPRASGSTAETATGSPPIRGWSDRSMEIG*

>peptide 6 (30 aa)
RALRGLSLVREDREGRTSGVPVIVPTVNAG*

Sequence

>CNT30363261
TAGAGCATTGAGAGGACTTTCCCTAGTACGAGAGGACCGGGAAGGACGCACCTCTGGTGTACCAGTTATCGTGCCTACGGTAAACGCTGGGTAGCCAAGT
GTGGAGAGGATAACTGCTGAAAGCATATAAGTAGTAAGCCCACCCCAAGATGAGTGCTCTCTCCTCCGACTTCCCTAGAGCCTCCGGTAGCACAGCCGAG
ACAGCGACGGGTTCTCCACCCATACGGGGATGGAGCGACAGAAGTATGGAAATAGGATAAGGTAGCGGCGAGACGAGCCGTTTAAATAGGTGTCAAGTGG
AAGTGCAGTGATGTATGCAGCTGAGGCATCCTAACGAACGAACGATTTGAACCTTGTTCCTACACGACCTGATCAAATCGATCAGGCACTTGCCATCTAT
CTTCATTGTTCAACTCTTTGATGAAAAGAAAAGATGAAAAAACCAAAAAAAAGCTCTGCCCTTCCATCTCTTGGATAAATAGAGAGGGAGGGCAGAGTCC
TTTGGTGTCCCTTCCAGTTAAGAATTGGGGCTTCACAATTACTAGCCAATATTTCTCTCATGCCTTTTCTCGTTCATGGTTCGATATTCTGGTGTCCTAG
GCGTAGAGGAACCACACCAATCCATCCCGAATTTGGTGGTTAAACTCTACTGCGGTGACGATACTGTAGGGGAGGTCCTGCGGCAAAATAGCTCGATGCC
AGAATGATAAAAAGCTTAACACCTCTTATTTTACTTTTTCACTATTTTGAAATACGAAAAAGATCCAAATCCAAAACGCAAAGGTCGTCTTATTCAAAAC
CTCAATCATCCCCTCTCTCCCACTTCACACCTCAGAACGCACTGTTCTTATAGAGAGAAAGGCGCTTTCCCATCTTCTTAACCCGAAATGAAATGGCTGA
GGAGAAGAAGGTTCCTTTTGGGGGGTATCCCCGGGAAGAGATCCAGTGGAGACGGGGTGGGCCTGTAGCTCAGAGGATTAGAGCACGTGGCTACGAACCA
CGGTGTCGGGGGTTCGAATCCCTCCTCGCCCACAGCCTTCCAAAGGGGGAAGGACCTTTACTTTCTCCCTGAGGGTAGGAAAATCATGATCGGAATAGCG
GACGTAAAGCTATTGAACTTGGGTATGCTCTTTCCTTTTGTCGAAGTGGAATCGTAGAACAGAATGTGATACGATGAGATAGAATGCAATAGAAACAAGG
ATAGCGAACGGGTTACCTACTCCTAAGGGTCAAAGCAAGCCTTTTAATTCAATTCTTTATTCTTACATTAAAG