Detailed information on CNT30363251


BLAST search results

BLAST vs Swiss-Prot:
sp|P12653|GSTF1_MAIZE, E-value = 7e-87

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522744Sorghum bicolorSetaria italica2323.1688.06268forward
CNT3014272Sorghum bicolorZea mays17.8556.9993.27208forward

Expression of CNT30363251

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MFANQFTPIEQTAQDETEQDNQKSNSDSFQLWFLYTT*

>peptide 2 (32 aa)
MSQIYETVNNTNNRRISHSNNVLKTTLFPWKKK

>peptide 3 (39 aa)
MRVSVEHRCVGRSKQAESGRYMVKVSKILALGQTCLVHL*

>peptide 4 (37 aa)
AQNKLGLFHSPIDRAARFKLMASSWQRPSGQMASPSG*

>peptide 5 (72 aa)
MKQNKITKSQIRIPFSFGFYIRHNRTLPYWTSGEKLEHMVTMSNMQSPWCNDTLQSDNHFLTSWCIYKCCFL*

>peptide 6 (76 aa)
MRTWKRMGFNTEVYWFASTSIQTSTIADSSRFPTLNSSGLFLRAAYLQIARDSGTTDEKYLNKNKIRKSTSLVDAK*

Sequence

>CNT30363251
ATGCCCAGAACAAACTTGGCTTATTCCATTCACCGATTGATAGGGCAGCCCGCTTCAAGCTGATGGCTTCATCATGGCAGCGACCTTCTGGACAGATGGC
CTCTCCATCAGGCTAGACCACCAGGCCTTCACATGCGGGTAAGCGTCGAACACAGATGCGTAGGGCGTAGCAAACAGGCAGAGAGTGGCAGATACATGGT
TAAGGTCAGCAAGATACTTGCACTTGGTCAGACGTGCCTCGTACACCTCTAGCACCTTCTTCAGCTTCTCAAGGTTCTCATCCACAACTTTCTGGTCGGT
GGTTCCTCCAAGCATCGGACTGATGAGAACCTGGAAGAGGATGGGATTCAATACAGAGGTGTACTGGTTTGCCTCCACCTCCATCCAAACATCCACCATT
GCTGACTCCTCAAGGTTTCCTACCCTCAACAGCTCTGGTTTGTTTTTGCGAGCAGCATACTTGCAGATTGCACGTGATTCTGGCACCACAGATGAAAAAT
ATTTAAATAAGAATAAAATTAGAAAATCAACATCATTAGTAGATGCAAAATGATTCTACAAACACTTCTCAGAAAGCAATAATTAAATACAAAAAAAGGC
ATACCATCTCTGCACTTGATTAAATACATGCCCTGATGAGTCAAGAGTGAAATAATGTGTTTATTTTAATATGCTTACTGAACTCATTCATGTTTGCCAA
TCAATTCACTCCTATAGAACAGACAGCACAAGATGAAACAGAACAAGATAACCAAAAGTCAAATTCGGATTCCTTTCAGCTTTGGTTTTTATATACGACA
TAATAGAACACTTCCTTATTGGACTAGTGGGGAAAAACTTGAACACATGGTAACCATGTCAAATATGCAATCCCCATGGTGCAATGACACTTTGCAATCA
GACAACCATTTTTTAACATCATGGTGTATATATAAATGTTGTTTCCTTTAGTATCTCTTAAGAACATGTGCTTCTAGCAATCAGACATTTTTTTAATATC
TCTTAAGAACATGTGCTTCTAACAAAATCTGAGATATCATTTAAGTGGACATTGAAGCGCTAGCCATGTCACAAATTTATGAAACGGTTAATAATACCAA
CAACAGGCGAATTAGTCACAGCAACAATGTATTAAAAACAACCCTATTTCCGTGGAAGAAAAAAG