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Detailed information on CNT30362991


BLAST search results

BLAST vs Swiss-Prot:
sp|P12329|CB21_MAIZE, E-value = 7e-94

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671996Sorghum bicolorSetaria viridis81.5891.5889.72642forward

Expression of CNT30362991

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MVMRPSPKEPTLMGVPAIAVEEIDMVEAAIDEQTLRA*

>peptide 2 (29 aa)
MAQREWITSSSRFLAKVSGSADSPAVSQP*

>peptide 3 (30 aa)
MQRETRDTHAANLQHQSIHVRPLRKDNGVA*

Sequence

>CNT30362991
ATTAATGGATGACCTTAATCTGACAAATCAATAATTAACCACCGGGAAACAAAACCACAACTACTATTGCACAAGCATCGTTCGTCTTAGTGTACAACGC
CAACTCATCATCATCTCGACTTGCCCCCTGAAATGCAACGTGAAACAAGAGACACACATGCAGCTAACTTGCAGCATCAATCAATCCACGTACGCCCTCT
CCGAAAAGACAATGGAGTTGCATAGCCAACTGAGCAGCTGATGAGCTTAGTTGCCGGGGACGAAGTTGGTGGCGTAGGCTGGGGTTGCCCAGGTAGTCCA
GGCCGCCCTCGCTGAAGATCTGGGAGCCGGCCTTGAACCAGACGGCCTCGCCGAACTTGACGCCGTTGCGGGCGAGCAGCTCGGGGAAGACGCAGCCGAG
CGCGCCCAGCATGGCCCAGCGGGAGTGGATCACCTCCAGCTCGCGGTTCTTGGCGAAGGTCTCGGGGTCGGCCGACAGCCCCGCGGTGTCCCAGCCGTAG
TCGCCGGGGAACTCGCCGGTGAGGTAGCTCGGGGGCTCGCCGGAGAAGGGGCCGAGGTACTTGACGCGGTCGGGCCCGTACCAGGGACTGCCGGACGCCG
CCACCTTGGGCTTGGCCGCGGTCTTGCGCATGGTGATGCGGCCCTCGCCGAAGGAGCCCACCTTGATGGGGGTGCCGGCCATCGCCGTGGAGGAGATCGA
CATGGTGGAGGCGGCCATTGATGAGCAAACTCTGCGAGCGTGAGAGTGTTGGACCGGTTGCTAGCTGCTGCTGCTGCTGCTGGTGGT